Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01066 ATGGCCACCTTGCAGATGTCCCATGTTGATTTGGAGCAAGGAAACCATCGCCGTTCGGTTGTTGGAAGTGATGCGAGCGTTGAAGGGAGCTTGTGCTTCTCTGATGCTGATGATGGTTCTTGCTACTCTCGTTTCTACTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGATTGTGTTTCTGATCCTGAGGCTGGGGGTGTTCCTCATTCTGGGAGAGCTTCTTCTGTTTCTGAGTGCTCTGTGGAGTTGGAAACTAGAACTGGGGTTCCTGAGATCAAGGTGCATTTGGCTAAAGTGGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGTGAGTGATAGCCATGAGTCTGGTGCCCCCATAGAATTGGGTTGTTCCTGTAAGGGTGATTTGGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACTTGTGAAATCTGTCATTCTGTTGCTCGGAATGTTTATGGAGGAAACGAGGATTCGACAGAGCATGTTAGCGACGGTAACAATGGTACTACAGCAGCAGCCACAGTCTCCACAACTGCTCCTTTTACAGAACCTCGTAGATTTTGGCATGGCCATCGCTTCCTCAATTTCTTGCTTGCTTGTATGGTTTTTGCTTTTGTGATATCATGGCTTTTCCACTTCAATGTGACATCATCGTAG 693 0.4646 MATLQMSHVDLEQGNHRRSVVGSDASVEGSLCFSDADDGSCYSRFYSTNGGSYDDYSFDCVSDPEAGGVPHSGRASSVSECSVELETRTGVPEIKVHLAKVEKDCRICHMGLVSDSHESGAPIELGCSCKGDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGGNEDSTEHVSDGNNGTTAAATVSTTAPFTEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVTSS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01066 230 PANTHER ZINC FINGER, RING-CH-TYPE 15 228 - -
Vian2g01066 230 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
Vian2g01066 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 165 IPR013083 -
Vian2g01066 230 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
Vian2g01066 230 SMART ringv_2 104 157 IPR011016 GO:0008270
Vian2g01066 230 CDD RING_CH-C4HC3_MARCH 105 157 - -
Vian2g01066 230 SUPERFAMILY RING/U-box 102 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01066 Vian-Chr2 20105733 20108225 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01066 63 230 C3H Transcription Factor Family AT5G05830 59.172 4.75e-66 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01066 - - gmx:100808666 414.461