Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01051 ATGCGCATCATCGGATCTCCACATCCGATTACCATCATCGGCCATCCGCAGTGGATTGACATCATCGGCTACCAGCATGAGAATGAAGGGTTCAAGGAGTTCAGGGGTGAAGGGTTCAACATTGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCAGAAACTACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCAATGGAGATGCACTTGGGGAGGAGTTTAAAGGTTATGTATTCAAAATTACTGGAGGCTGTGACAAACAAGGATTTCCAATGAAACAGGGAGTGCTGACCCCTGGTCGGGTTCGCCTGCTTCTTCATAGGGGAACTCCATGTTTCCGTGGATATGGAAGGCGTAATGGAGAGCGCAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTATCTGTTCTTAACTTGGTAATTGTGAAGAAGGGAGAAAATGACTTGCCAGGATTGACTGACGTTGAGAAGCCAAGGATGAGAGGGCCAAAGAGAGCCTCCAAAATCCGGAAACTGTTCAACCTTTCTAAAGAGGATGATGTTAGGAAGTATGTCAACACCTACCGTCGGACATTTACAACAAAAGCAGGGAAAAAGGTGAGCAAAGCTCCAAAGATTCAAAGACTAGTCACTCCTCTCACTCTCCAAAGGAAGCGGGCACGGATTGCTGATAAGAAAAAGAGAATTGCCAAGGCAAAATCAGAGGCAGCCGAGTATCAGAAACTCCTTGCCTCCAGGTTGAAGGAGCAGAGGGAACGCCGCAGTGAGAGTTTGGCCAAGAGGAGGTCCAAGATTTCCAGTGCTACCAAGGCAGCTGTATAG 852 0.4859 MRIIGSPHPITIIGHPQWIDIIGYQHENEGFKEFRGEGFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVNGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKISSATKAAV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01051 283 Coils Coil 225 252 - -
Vian2g01051 283 MobiDBLite consensus disorder prediction 255 273 - -
Vian2g01051 283 MobiDBLite consensus disorder prediction 255 283 - -
Vian2g01051 283 SMART Ribosomal_S6e_2 39 164 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vian2g01051 283 PANTHER 40S RIBOSOMAL PROTEIN S6 39 276 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vian2g01051 283 PIRSF RPS6e 38 283 IPR014401 GO:0003735|GO:0005840|GO:0006412
Vian2g01051 283 Hamap 30S ribosomal protein S6e [rps6e]. 7 153 IPR020924 GO:0003735|GO:0005840|GO:0006412
Vian2g01051 283 Pfam Ribosomal protein S6e 39 164 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vian2g01051 283 ProSitePatterns Ribosomal protein S6e signature. 88 99 IPR018282 GO:0003735|GO:0005840|GO:0006412
Vian2g01051 283 Gene3D - 169 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01051 Vian-Chr2 19732280 19735621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01051 39 278 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 72.500 6.63e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01051 K02991 - gmx:547746 436.802