Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01006 ATGCTTTGCCCCTCATTGATTCTCTTCAGTTTTCGAACAAAGTCTCTTTGGATTTGGATTCCTTTGTCCAATATAAGCTCCTATCCTGTGCATTCCTATCTCGGTGAGATCATGAATAGGGCAATTGAAGTACTGTCTCCAGCCTCCTATCTCCAAAATTCCAACTGGTTGTTCCAGGAAAGCCAGGGAGGAGGATGGACTGCGGAAGAGAACAAGCTGTTTGAGAATGCTTTGGCTTACTATGATAAGGACACCCCTGATAGATGGATGATGGTGGCAGCCATGATTCCTGGGAAAACTGTTGGTGATGTGATCCAACAGTACAGAGAGCTTGAGGAAGATGTGAGTGTCATTGAAGCAGGTTTGATTCCAGTTCCTGGCTATACTACCAGTTCTTTCACATTGGAGTGGGTTAACAGTCAAAGCTATGACGAGTTCAAGCACTTTTGTACTGTTGGTGGGAAAAGGGGTGCATCCACTAGGCCATCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAAGAGCACAGGCAATTTCTGCTTGGTCTGAAGAAGTATGGTAAAGGGGATTGGAGAAACATTTCAAGGAACTTTGTGACCACAAGGACACCTACCCAGGTTGCAAGTCATGCTCAGAAGTACTTCATCAGGCAGCTTACAGGGGGGAAGGACAAGAGGAGATCCAGTATCCATGACATCACAATGGTCAATCTCCAAGAAACAAAATCTCCTTCATCAGACACTACCAGGCCTTCTTCACCCCTACAGAATCAGAAATTGTCTAGCATGGTTAAGCAGGAATATGATTGGAAATCGCCATGTGATGACATGCCTTTTGTTTTCAATTCAACAAATGGAAACATGTTCATGGCAGCACCACTGCATGGGATTTCTTCATATGAATCTAGACCACAGGAGCATAATATACTTAGACAATCTCCATGGATGCCAGTTTTCACCTTGTGA 972 0.4444 MLCPSLILFSFRTKSLWIWIPLSNISSYPVHSYLGEIMNRAIEVLSPASYLQNSNWLFQESQGGGWTAEENKLFENALAYYDKDTPDRWMMVAAMIPGKTVGDVIQQYRELEEDVSVIEAGLIPVPGYTTSSFTLEWVNSQSYDEFKHFCTVGGKRGASTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLQETKSPSSDTTRPSSPLQNQKLSSMVKQEYDWKSPCDDMPFVFNSTNGNMFMAAPLHGISSYESRPQEHNILRQSPWMPVFTL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01006 323 MobiDBLite consensus disorder prediction 154 173 - -
Vian2g01006 323 MobiDBLite consensus disorder prediction 241 264 - -
Vian2g01006 323 SUPERFAMILY Homeodomain-like 64 119 IPR009057 -
Vian2g01006 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 221 IPR017930 -
Vian2g01006 323 ProSiteProfiles Myb-like domain profile. 165 217 IPR001005 -
Vian2g01006 323 SMART sant 62 114 IPR001005 -
Vian2g01006 323 SMART sant 169 219 IPR001005 -
Vian2g01006 323 Pfam Myb-like DNA-binding domain 172 217 IPR001005 -
Vian2g01006 323 NCBIfam myb-like DNA-binding domain, SHAQKYF class 168 220 IPR006447 GO:0003677
Vian2g01006 323 ProSiteProfiles SANT domain profile. 173 221 IPR017884 -
Vian2g01006 323 CDD SANT 66 111 IPR001005 -
Vian2g01006 323 FunFam transcription factor MYB1R1 171 222 - -
Vian2g01006 323 FunFam Transcription factor SRM1 58 125 - -
Vian2g01006 323 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 60 287 IPR043363 -
Vian2g01006 323 CDD SANT 172 217 IPR001005 -
Vian2g01006 323 Gene3D - 171 221 - -
Vian2g01006 323 Gene3D - 58 125 - -
Vian2g01006 323 SUPERFAMILY Homeodomain-like 166 220 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01006 Vian-Chr2 17591809 17593445 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian2g01006 Myb_DNA-binding 4.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01006 - - var:108329798 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01006 2 17591809 17593445 Vian2g01006 2 17591809 17593445 ECH
Vian2g01006 2 17591809 17593445 Vian2g02579 2 46508174 46509302 ECH
Vian2g01006 2 17591809 17593445 Vian7g01597 7 25019650 25020682 ECH
Vian2g02579 2 46508174 46509302 Vian2g01006 2 17591809 17593445 ECH