Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01000 ATGGTGTTCTTATTTCCAAAGCTTCAGCCCATTAAGCTCATATCATTATGGTTCCTTCTACTTGTAATGGCAACTTCTCTCCATGCAACACTGTCTTCCTCACTCTCACTTCAACACACAGAAGCCAACGCTTTGTTGAAGTGGAAAGCAAGCTTTCACAACTCAACTCATACATTGCTATCTTCATGGCATGGCAATACTTCTTGCAATTGGCTTGGACTTGCTTGTGACCACTCAGGATCAGTCTCCAACATAAATCTCACAAACATTGGATTAAGTGGTACGCTTCAAACTCTAAACTTGTCATCACTTCCAAACATTCTCACTCTTGATATCAGTTTTAACTCCTTCACTGGAAGCATTCCTCCTCAAATTGGAGTGTTGTCCAAACTCACTCATCTTGATTTAAGTTACAATCATCTCACTGGACCAATTCCTTCTGAAATAACTCGGTTGGTCAATCTTCACTTTTTATATTTGGAAAGAAATGTTTTCAACGGTTCTATTCCTGACGAAATAGGTGCATTAAGGAATTTGAGAGAGATTGTCATTCAATTTGCCAATCTCACCGGTACTATCCCAAATTCTCTCGGAAAGCTATCAGTCTTGTCACATATTAGCTTGTGGAATTGCAGTCTTACAGGGTCTATTCCAAAATCTATAGGAAATATGACAAGTCTTGTATATCTAAATTTTGCGCAGAACAACCTTTATGGACATATTCCTCACGAAATTGGAAATTTGTCAAACTTAGAGAATTTGTGGTTAGCAATTAATAACTTAGACGGTTCCATTCCTCAAGAAATAGGTAAGCTGCAGAACCTAAAGGATTTATATATGTATGACAACAATTTATCTGGAAACATTCCCGTGGAAATGGGGAAGTTGGTCAACTTGACCTGGTTATGGCTTTTTAACAATAATCTTTCGGGTTCTATTCCTCGAGAAATTGGAATGATGACAAATTTGTTTCAAATTGATTTGTCCAGTAACTCTTTGTCAGGTACAATGCCCCCTACAATTGGAAATCTGAGCAAATTAGGGAATTTATACATATATGGCAACCATCTCTCTGGTTCCATTCCTAATGAAGTGGGGAAACTCCATTCTCTTATGACAATCCAATTGTTAGATAATAATCTCTCTGGACCAATCCCATCTTCCATCGGTAACTTGCTCAATTTGGATTCTATTCGTCTTGACAGAAACACTCTCTCCGGAACAATTCCTTCCACTATTGGTAACTTGACAAAGCTTACCACACTTACTTTATTCTCAAATAAGCTTAGTGGACACATCCCAATAGAAATGAACATGCTTAACAACCTGGAAAAATTGCATTTATATGACAATAATTTCATTGGTCAATTGCCTCACAATGTTTGCACTAGTGGAAAGTTGATAAACTTTACTGCTGGCAGAAACTATTTCACAGGTCCAGTATCAAAGAGTTTGAAGAATTGCACTAGCCTCATGAGAGTGAGGCTTGAACAAAACCAATTGACAGGCAATGTGACAGAGGATTTTGGTGTATATCCAAACTTGGATTACATAGATCTGAGTGATAATAACTTTCATGGCCATCTTTCTCCAAAATGGGGGAAATGCCATAATCTCACAAGCCTCAAAATCTCCAACAATAATTTATCAGGAAGCATTCCACCAGAACTAATTCAGGCAACCAATTTACATGTACTTGAACTGTCTTCAAATCACCTCGTAGGAGACATTCCAGAAGATTTAGGTAATTTGACCTACTTGTTCAAACTCTCTCTCAATAATAATAATCTTTCAGGGAATGTTCCTATACAGATAGCCTCATTGCTAGATCTTGACACTTTAGAGCTCGGAGCAAATCGTTTTTCTGGCTTAATTCCAACTCAACTTGGTAATTTGGCCAAGTTATTACACTTGAATTTGAGCCGAAATAAATTTACGGAAAATATTCCATCCGAGTTTGGTAAATTAAAATATGTTCAAAGTCTCGATCTTAGCATGAACATTTTGAGTGGAAAAATACCACCCGTGCTTGGACAGTTGAAAAGCTTAGAAACATTAAATCTCTCACACAATCATCTTTCAGGCGATCTCTCCGGCCTTGACGAGATGAGAAGTTTGATATCTATTGATATATCATACAACCAATTACAGGGTCCACTTCCCAACATTCCAGCCTTCAAAATGGCTACAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGTAATGTCTCAGGCTTAGAACCATGTCCAACATCACCTGACAATTATGAAAATCATCATAAGACTAACAGATTCATATTGGTATTTTTACCCATTGGTTTGGGCACTTCCATGCTAGCATTATTTGTCTTTGGAGTGTCTTATCATTATTATCGAAGCTCAAAGAAGAAAGTACATGAAGATGAAGAATCACCAGGTCAAAATCTCTTTTCGATATGGAGTTTTGATGGAAAGATGGTGTATGATAACATAATTGAAGCCACAGAAGATTTTGACAATAAACATCTCATTGGAGTTGGAGGACAAGCGAGTGTCTACAAAGCTGAATTGCAAACAGGTCAAGTTGTTGCAGTTAAGAAACTCCATTCAGTAAAAAATGGAGAAATGTCTAACGTTAAAGCTTTCGCAAGTGAAATTCAAGCTTTGACAGAGATTCGACACCGTAACATTGTGAAGTTATACGGGTATTGTTCTCATTCCCGATTCTCGTTTTTGGTGTATGAGTTGATGGAAAAGGGAAGCATAGATAAGATTTTAAAAGACGATGAAGAGGCAATTGCATTTAATTGGAAAAGGAGGGTTGATGCCATTAAAGGTGTGGCAAATGCTTTATGCTATATGCATAATGATTGTTCACCTCCAATTGTTCATCGAGATATATCAAGCAAGAATGTTCTATTGAATTTGGAGTATGTGGCTCATGTCTCAGATTTTGGAACAGCCAAGCTTCTTAATACTAATTCAACAAATTGGAGTTCATTCGTGGGAACTTTTGGATATGCTGCTCCAGAACATGCATACACAATGGAAATAAATGAAAAATGCGATGTGTATAGCTTTGGGGTATTAGCACTGGAAATAGTTTTGGGAGAGCATCCTGGAGATCTTATAAGTTCATTGTTGACATCTTCATCGAATGTGATGGAGTCAACACTTGATATTACTTCATTGATGGATAAGTTAGATGAGCGTCTCCAACATCCTGTAAAACCTATGGCTAAGGAGATAGAATCAATTCTAAGGATGGCAAATGCTTGCTTGACTGAAAATCCTCGTTCTCGCCCTACCATGGACCAAGTTGCCAGCTACTTTTCAAAGTACAAGTCATGTTCATTCAATTGA 3345 0.3743 MVFLFPKLQPIKLISLWFLLLVMATSLHATLSSSLSLQHTEANALLKWKASFHNSTHTLLSSWHGNTSCNWLGLACDHSGSVSNINLTNIGLSGTLQTLNLSSLPNILTLDISFNSFTGSIPPQIGVLSKLTHLDLSYNHLTGPIPSEITRLVNLHFLYLERNVFNGSIPDEIGALRNLREIVIQFANLTGTIPNSLGKLSVLSHISLWNCSLTGSIPKSIGNMTSLVYLNFAQNNLYGHIPHEIGNLSNLENLWLAINNLDGSIPQEIGKLQNLKDLYMYDNNLSGNIPVEMGKLVNLTWLWLFNNNLSGSIPREIGMMTNLFQIDLSSNSLSGTMPPTIGNLSKLGNLYIYGNHLSGSIPNEVGKLHSLMTIQLLDNNLSGPIPSSIGNLLNLDSIRLDRNTLSGTIPSTIGNLTKLTTLTLFSNKLSGHIPIEMNMLNNLEKLHLYDNNFIGQLPHNVCTSGKLINFTAGRNYFTGPVSKSLKNCTSLMRVRLEQNQLTGNVTEDFGVYPNLDYIDLSDNNFHGHLSPKWGKCHNLTSLKISNNNLSGSIPPELIQATNLHVLELSSNHLVGDIPEDLGNLTYLFKLSLNNNNLSGNVPIQIASLLDLDTLELGANRFSGLIPTQLGNLAKLLHLNLSRNKFTENIPSEFGKLKYVQSLDLSMNILSGKIPPVLGQLKSLETLNLSHNHLSGDLSGLDEMRSLISIDISYNQLQGPLPNIPAFKMATIEALRNNKGLCGNVSGLEPCPTSPDNYENHHKTNRFILVFLPIGLGTSMLALFVFGVSYHYYRSSKKKVHEDEESPGQNLFSIWSFDGKMVYDNIIEATEDFDNKHLIGVGGQASVYKAELQTGQVVAVKKLHSVKNGEMSNVKAFASEIQALTEIRHRNIVKLYGYCSHSRFSFLVYELMEKGSIDKILKDDEEAIAFNWKRRVDAIKGVANALCYMHNDCSPPIVHRDISSKNVLLNLEYVAHVSDFGTAKLLNTNSTNWSSFVGTFGYAAPEHAYTMEINEKCDVYSFGVLALEIVLGEHPGDLISSLLTSSSNVMESTLDITSLMDKLDERLQHPVKPMAKEIESILRMANACLTENPRSRPTMDQVASYFSKYKSCSFN 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01000 1114 ProSiteProfiles Leucine-rich repeat profile. 682 704 IPR001611 GO:0005515
Vian2g01000 1114 PRINTS Leucine-rich repeat signature 131 144 - -
Vian2g01000 1114 PRINTS Leucine-rich repeat signature 680 693 - -
Vian2g01000 1114 FunFam Nuclear pore complex protein NUP107 38 194 - -
Vian2g01000 1114 Gene3D Transferase(Phosphotransferase) domain 1 911 1112 - -
Vian2g01000 1114 Gene3D Ribonuclease Inhibitor 537 608 IPR032675 -
Vian2g01000 1114 Gene3D Ribonuclease Inhibitor 460 536 IPR032675 -
Vian2g01000 1114 FunFam MDIS1-interacting receptor like kinase 2 911 1111 - -
Vian2g01000 1114 SUPERFAMILY RNI-like 230 611 - -
Vian2g01000 1114 Gene3D Ribonuclease Inhibitor 203 459 IPR032675 -
Vian2g01000 1114 Gene3D Ribonuclease Inhibitor 611 750 IPR032675 -
Vian2g01000 1114 SMART LRR_typ_2 248 272 IPR003591 -
Vian2g01000 1114 SMART LRR_typ_2 561 584 IPR003591 -
Vian2g01000 1114 SMART LRR_typ_2 296 320 IPR003591 -
Vian2g01000 1114 SMART LRR_typ_2 632 656 IPR003591 -
Vian2g01000 1114 SMART LRR_typ_2 440 464 IPR003591 -
Vian2g01000 1114 SMART LRR_typ_2 344 368 IPR003591 -
Vian2g01000 1114 SMART LRR_typ_2 680 703 IPR003591 -
Vian2g01000 1114 SMART LRR_typ_2 392 416 IPR003591 -
Vian2g01000 1114 SMART LRR_typ_2 128 152 IPR003591 -
Vian2g01000 1114 SMART LRR_typ_2 536 560 IPR003591 -
Vian2g01000 1114 Gene3D Phosphorylase Kinase; domain 1 793 910 - -
Vian2g01000 1114 ProSitePatterns Tyrosine protein kinases specific active-site signature. 956 968 IPR008266 GO:0004672|GO:0006468
Vian2g01000 1114 FunFam Uncharacterized protein 463 759 - -
Vian2g01000 1114 Pfam Leucine rich repeat 106 163 IPR001611 GO:0005515
Vian2g01000 1114 Pfam Leucine rich repeat 611 667 IPR001611 GO:0005515
Vian2g01000 1114 Pfam Leucine rich repeat N-terminal domain 40 77 IPR013210 -
Vian2g01000 1114 Gene3D Ribonuclease Inhibitor 38 196 IPR032675 -
Vian2g01000 1114 SUPERFAMILY RNI-like 65 314 - -
Vian2g01000 1114 SUPERFAMILY Protein kinase-like (PK-like) 812 1104 IPR011009 -
Vian2g01000 1114 FunFam Leucine-rich repeat receptor protein kinase MSP1 794 910 - -
Vian2g01000 1114 ProSiteProfiles Protein kinase domain profile. 832 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01000 1114 Pfam Protein kinase domain 833 1102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01000 1114 FunFam Inactive leucine-rich repeat receptor-like protein kinase 201 462 - -
Vian2g01000 1114 SUPERFAMILY L domain-like 581 724 - -
Vian2g01000 1114 SMART LRR_sd22_2 680 702 - -
Vian2g01000 1114 SMART LRR_sd22_2 272 291 - -
Vian2g01000 1114 SMART LRR_sd22_2 128 157 - -
Vian2g01000 1114 SMART LRR_sd22_2 320 346 - -
Vian2g01000 1114 SMART LRR_sd22_2 608 634 - -
Vian2g01000 1114 SMART LRR_sd22_2 224 250 - -
Vian2g01000 1114 PANTHER LEUCINE RICH REPEAT KINASE 2 389 1109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01000 Vian-Chr2 17382214 17385709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01000 19 1004 Receptor kinase-like Gene Family AT4G08850 43.443 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian2g01000 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01000 - - gmx:100811066 1523.45