Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00999 ATGTCTGCTTCTATGGTCACTTCTCTTCATGCAGCATTGTCTTCCTCACTCTCACTTCAACACACAGAAGCAAAAGCTTTGTTGAAGTGGAAAGCTAGCCTTGACAGCCCAAGTCAAACATTACTATCTTCATGGGATGGCAATAGTTCATGCAGTTGGCTTGGAATTGCTTGTGACCACTCAGGATCAGTCTCCAACATAAATCTTACAAACATTGGATTAAGTGGTACGCTTCAAACTCTCAATTTTTCATCATTTCCAAACATCCTCACTCTTGATACCAGTCTTAACTCCTTCACTGGAAGTATTCCTCCTCAAATTGGGGAATTGTCCAAACTCACTCATCTTGATTTAAGTCACAATCATCTCACTGGACCAATTCCTTCTGAAATAACTCAGTTGGTCAGTCTTCAAATTTTACATCTGGAAAAGAACATTTTCAATGGCTCTATTCCTGAAGAAATAGGTGAATTAAGGAATTTGAGAGAGATTACTTTTAAATTTGCCAATTTCACGGGGACAATCCCAAAGTCTATTGGAAAACTGCCATTCTTGTCAAAGCTTTGTGCTTGGAATTGTGGTCTCACAGGGTCTATTCCAAACTCTATAGGAAATTTGAGCAGCCTGCTATTTCTAGATTTTACGCTGAACAACCTTTACGGAAATATTCCTAATGAAATTTGGAATTTGACAAACTTAAAGACTTTGCGGCTAGGATATAATAGCTTACATAGTTCTATTCCTAGAGAAATATGTACGCTGCAGCAGCTGGAGGCTCTAGATATGAAAGCAAACAATTTATTTGGCAACATTCCTGTGGAAATTGGGAAATTGGTGAACTTGACCACGTTATGGCTTTCAAGCAATAACCTTTCGGGTTCTGTTCCCCGAGAAATTGGAACGATGACAAATTTGTTTCAACTTGATTTGTCCAATAACTCTTTATCAGGTACAATCCCCCCTACAATTGGAAATCTGAGCAAGTTAGGTTATTTATGCATAAATGACAACCATCTCTCTGGTTCCATTCCTAATGAAGTCGGAAAACTCCATTCTCTTCTGACAATCCGATTGTCAAATAATAATCTCTCTGGACCAATCCCATCTTCCATTGGTAACTTGTTCAATTTAGACTCTATTCATCTTATTAGAAACAAACTCTCCGGAATAATTCCTTCGACCATTGGTAACTTGACAAAGCTCACCGCTCTTACTTTATTCTCAAATAAGCTTAGTGGACACATCCCGGCAGAAATAAATATGCTTAACAACCTGGAAACATTGGATTTATGTGACAATAATTTCATTGGTCATTTGCCTCACAATGTTTGCTATAGTGGAAAGTTGCTAAAGTTTACTGCTGCCAGAAACCATTTCACAGGTCCAGTACCCAAGAGTTTGAAGAATTGCTCCAGCCTCATAAGAGTTTCAGTTCATGAAAATCATTTGACAGGAAATCTAACAGAGGATTTTGGTGTATATCCACACTTGGATTACATATACCTGAGTGAAAATAACTTTTATGGCCATCTTTCCCCAAAATGGGGGAAATGCCGTAATCTCAGAAGCCTCAAAATCTCTAACAATAATTTATCAGGAAGCATTCCACCAGAACTAAGTCAGGCAACCAATTTACATATAATTCAACTGTCTTCAAATCACCTCACAGGAGACATTCCTGAACATTTAGGTAATTTGACCTACCTGTTCGAACTTTCTCTCCATAGTAATAATCTCTCAGGGAATCTTCCTATAAAAATAGCATCATTGCAAGATCTTGAAACCTTAGAGCTCGGAGCAAATAGTTTTTCTGGTTTAATTCCAAATCAACTTGGTAATTTGGTCAAGTTATTACATTTGAATTTGAGCCAAAATAGATTTACTGAAAATATTCCATTGGAGTTTGGTAAATTAAAATATCTTCAAAGTCTTGATCTTAGCATGAACATTTTGAGTGGAAAAATACCATCAAAGTTGGGAGAGCTTAAAAGCTTAGAAATATTAAATATCTCACATAATCATCTTTCAGGTGATCTCTCCAGCTTTGATGAGATGATAAGCTTGATATCTGTTGATATATCATACAACCAATTACAGGGTCCACTTCCCAACATTTCAGCCTTCAATATGGCTACAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGTAATGTCTCAGGCTTGGAACCATGCTCAACATCACGAAACAAATCTCAAAACAGAGTCATATTGGTAGTTTTACCCATTGGTTTGGGAACATTCATGCTAACATTGTTTATCTTTGGAGTCTCATATCATCTTTGTCGAAAGTCAAAGACAAAAGAACATCCGATTGCAGAATCATCAGTTCAAAATCCTTTTGCGATATGGAGTATTGATGGAAAGATGGTGTATGAGAACATAATCGAAGCCACAGAAGAGTTTGACCATAAACATCTCATTGGAGTTGGAGGACAAGGAAGCGTTTTCAAAGCTGAATTGCAAACAGGTCAAGTTGTTGCTGTTAAGAAACTCCATTCAGTACAAAATGGAGAAAGTTCAAATGATAAAGCTTTCTCAAGTGAAATTCAAGCTTTGACAGAAATTCGACACCGTAACATTGTGAGGTTATATGGGTATTGTTCTCATTCTCGATTCTCATTTTTGGTGTATGAGTTCTTAGAAAGGGGAAGCATAGATAATAATTTAAAAAACAATGAAGAGGCAATTGCATTTAATTGGAAAAGAAGGATTGATGCCATTAAAGGTGTAGCAAATGCTTTATGCTATATGCATCATGATTGTTCACCTCCAATTGTTCATCGGGATATATCAAGCAAGAATGTTATTTTGAATTCGGAGTATGTGGCTCATGTCTCAGATTTTGGAACTGCCAAGCTTCTTAATACTAATTCAACCAATTGGACATCATTTGTGGGAACTTTTGGATATGCTGCTCCAGAACTTGCATACAAGATGGAAGTGAATGAAAAATGTGATGTCTACAGCTTTGGGGTATTAGCACTGGAAATACTTTTTGGAGAGCACCCTGGAGAATTTATAAATTCATTGTTGATATCTTCATCCAATGTCATGAATTCAACACTTAATATTTCTTCATTTCTAGGTAAGTTAGATGAACGTCTCCCATATCCTGCAAATATAGCTAAAGAAATAGCTTTGATTGTAAGGATAGTGAATGCATGCTTGAGTGAAAGCCCTAGTTCTCGTCCTACCATGAAGCAAGTGGTCAACTACTCTTCAATGTAG 3252 0.3684 MSASMVTSLHAALSSSLSLQHTEAKALLKWKASLDSPSQTLLSSWDGNSSCSWLGIACDHSGSVSNINLTNIGLSGTLQTLNFSSFPNILTLDTSLNSFTGSIPPQIGELSKLTHLDLSHNHLTGPIPSEITQLVSLQILHLEKNIFNGSIPEEIGELRNLREITFKFANFTGTIPKSIGKLPFLSKLCAWNCGLTGSIPNSIGNLSSLLFLDFTLNNLYGNIPNEIWNLTNLKTLRLGYNSLHSSIPREICTLQQLEALDMKANNLFGNIPVEIGKLVNLTTLWLSSNNLSGSVPREIGTMTNLFQLDLSNNSLSGTIPPTIGNLSKLGYLCINDNHLSGSIPNEVGKLHSLLTIRLSNNNLSGPIPSSIGNLFNLDSIHLIRNKLSGIIPSTIGNLTKLTALTLFSNKLSGHIPAEINMLNNLETLDLCDNNFIGHLPHNVCYSGKLLKFTAARNHFTGPVPKSLKNCSSLIRVSVHENHLTGNLTEDFGVYPHLDYIYLSENNFYGHLSPKWGKCRNLRSLKISNNNLSGSIPPELSQATNLHIIQLSSNHLTGDIPEHLGNLTYLFELSLHSNNLSGNLPIKIASLQDLETLELGANSFSGLIPNQLGNLVKLLHLNLSQNRFTENIPLEFGKLKYLQSLDLSMNILSGKIPSKLGELKSLEILNISHNHLSGDLSSFDEMISLISVDISYNQLQGPLPNISAFNMATIEALRNNKGLCGNVSGLEPCSTSRNKSQNRVILVVLPIGLGTFMLTLFIFGVSYHLCRKSKTKEHPIAESSVQNPFAIWSIDGKMVYENIIEATEEFDHKHLIGVGGQGSVFKAELQTGQVVAVKKLHSVQNGESSNDKAFSSEIQALTEIRHRNIVRLYGYCSHSRFSFLVYEFLERGSIDNNLKNNEEAIAFNWKRRIDAIKGVANALCYMHHDCSPPIVHRDISSKNVILNSEYVAHVSDFGTAKLLNTNSTNWTSFVGTFGYAAPELAYKMEVNEKCDVYSFGVLALEILFGEHPGEFINSLLISSSNVMNSTLNISSFLGKLDERLPYPANIAKEIALIVRIVNACLSESPSSRPTMKQVVNYSSM 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00999 1083 Pfam Leucine Rich Repeat 112 131 IPR001611 GO:0005515
Vian2g00999 1083 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 195 446 - -
Vian2g00999 1083 PANTHER LEUCINE RICH REPEAT KINASE 2 371 1079 - -
Vian2g00999 1083 ProSitePatterns Tyrosine protein kinases specific active-site signature. 933 945 IPR008266 GO:0004672|GO:0006468
Vian2g00999 1083 SMART serkin_6 809 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00999 1083 SUPERFAMILY L domain-like 22 278 - -
Vian2g00999 1083 Gene3D Ribonuclease Inhibitor 190 447 IPR032675 -
Vian2g00999 1083 Pfam Protein kinase domain 811 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00999 1083 SUPERFAMILY L domain-like 191 486 - -
Vian2g00999 1083 Gene3D Ribonuclease Inhibitor 617 732 IPR032675 -
Vian2g00999 1083 PRINTS Leucine-rich repeat signature 113 126 - -
Vian2g00999 1083 PRINTS Leucine-rich repeat signature 662 675 - -
Vian2g00999 1083 FunFam Uncharacterized protein 447 741 - -
Vian2g00999 1083 Pfam Leucine rich repeat N-terminal domain 22 59 IPR013210 -
Vian2g00999 1083 SUPERFAMILY Protein kinase-like (PK-like) 791 1080 IPR011009 -
Vian2g00999 1083 SMART LRR_typ_2 614 638 IPR003591 -
Vian2g00999 1083 SMART LRR_typ_2 350 374 IPR003591 -
Vian2g00999 1083 SMART LRR_typ_2 518 542 IPR003591 -
Vian2g00999 1083 SMART LRR_typ_2 278 300 IPR003591 -
Vian2g00999 1083 SMART LRR_typ_2 302 326 IPR003591 -
Vian2g00999 1083 SMART LRR_typ_2 590 613 IPR003591 -
Vian2g00999 1083 SMART LRR_typ_2 230 254 IPR003591 -
Vian2g00999 1083 SMART LRR_typ_2 110 134 IPR003591 -
Vian2g00999 1083 SMART LRR_typ_2 422 446 IPR003591 -
Vian2g00999 1083 FunFam Leucine-rich repeat receptor protein kinase MSP1 771 887 - -
Vian2g00999 1083 Gene3D Ribonuclease Inhibitor 20 178 IPR032675 -
Vian2g00999 1083 SUPERFAMILY L domain-like 454 724 - -
Vian2g00999 1083 ProSiteProfiles Protein kinase domain profile. 809 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00999 1083 FunFam MDIS1-interacting receptor like kinase 2 888 1083 - -
Vian2g00999 1083 Gene3D Transferase(Phosphotransferase) domain 1 888 1083 - -
Vian2g00999 1083 ProSiteProfiles Leucine-rich repeat profile. 112 134 IPR001611 GO:0005515
Vian2g00999 1083 FunFam Nuclear pore complex protein NUP107 20 177 - -
Vian2g00999 1083 Gene3D Phosphorylase Kinase; domain 1 769 887 - -
Vian2g00999 1083 Gene3D Ribonuclease Inhibitor 448 610 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00999 Vian-Chr2 17335879 17339281 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00999 5 981 Receptor kinase-like Gene Family AT4G08850 42.470 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian2g00999 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00999 - - gmx:100811066 1432.54