Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00993 ATGGTGTTCTTATTTCCAACGCTTGTGTCCATGAAGCTGCTATCATTATGGCTGCTTCTACTTGTAATGGCCCCTTCTCTCCACGCAACATTGTCTTCCTCACTCTCAGTTCAACATACAGAAGCAAACACTTTGTTGAAGTGGAAAGCAAGCCTTGGCAACTCAAGTCAAACATTCCTGTCTTCATGGGATGGCAATAGTTCATGCAATTGGCTTGGAATTATTTGTGATCACTCAGGATCAGTCTCCAGCATAAATCTTACAAACATGGGATTAAGTGGTACACTTCAACCTCTCAATTTTTCATCATTTCCAAACATTCTCACTCTTGATATCAGTCTTAACAACTTCACTGGCAGCATTCCTCCTCAAATTGGGGTGTTCTCCAAACTCACTCATCTTCATTTAAGTTACAATTATCTCACTGGACCAATTCCTTCTGAAATAACTCAGTTGGTCAATCTTCAGGTTTTACGTTTGGAAAAAAATGTTTTCGATGGTTCTATTCCTGACGAAATAGGTGCATTAAGGAATTTGAGAGATATTAGCATTCAAATTGCCAATCTCACAGGGACAATCCCAAAATCTATAGGAAATTTGACCAGTCTGTTATTTCTAGATTTTTCCCAGAACAACCTTTATGGACATATTCCTCACGAAATTGGGAACTTGTCAAACTTAAAGCAGTTATGGCTACGAAATAATAACTTACATGGTTCAATTCCTCGAGAAATATGTGCAGTACCCAAGAGTTTGAAGAATTGCTCCAGCCTCTGGAGAGTTTGGCTTGAACAAAACCAATTGTCAGGAAATGTGACGGAGGATTTTGGTGTTTATCCAAACTTGGATTACATAGATCTGAGTCATAATAACTTTTATGGCCATCTTTCTCCAAAATGGGGGAAATGCCATAATCTCACAAGCCTCAAAATCTCCAACAATAATTTATCAGGAAGCATTCCACCAGAACTAATTCAGGCAACCAATTTACATGTACTTGAACTGTCTTCAAATCACCTCGTAGGAGACATTCCCGAAGATTTAGGTAATTTGACCTACTTGTTCAAACTCTCTCTCAATAATAATAATCTTTCAGGGAATGTTCCTATACAGATAGCCTCATTGCTAGATCTTGACACTTTAGAGCTCGGAGCAAATCGTTTTTCTGGCTTAATTCCAACTCAACTTGGTAATTTGGCCAAGTTATTACACTTGAATTTGAGCCGAAATAAATTTGTGGAAAATATTCCATCCGAGTTTGGTAAATTAAAATATCTTCAAAATCTCGATCTTAGCATGAACACTTTAAGTGGAAAAATACCACCAGTGCTTGGAGAGTTGAAAAGCTTAGAAACATTAAATCTCTCACACAATCATCTTTCAGGCGATCTCTCCGGCCTTGACGAGATGAGAAGTTTGATATCTATTGATATATCATACAACCAATTACAGGGTCCACTTCCCAACATTCCAGCCTTCAAAATGGCTACAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGTAATGTCTCAGGCTTAGAACCATGTCCAACATCACCAGACAATTATGAAAATCATCATAAGACTAACAGATTCATATTGGTATTTTTACCCATTGGTTTGGGCACTTCCATGCTAGCATTATTTGTCTTTGGAGTGTCTTATCATTATTATCGAAGCTCAAAGAAGAAAGTACAAGAAGATGAAGAATCACCAGGTCAAAATCTCTTTTCGATATGGAGTTTTGATGGAAAGATGGTGTATGATTTTGGAGGACAAGGAAGCGTTTACAAAGCTGAATTGCAAACAGGTCAAGTTGTTGCTGTTAAGAAACTCCATTCAGTACAAAATGGAGAAATGTCCGACGTTAAAGCTTTCACAAGTGAAATTCAAGCTTTGACAGAGATTCGACACCGTAATATTGTGAAGTTATACGGGTATTGTTCTCATTCCCGATTCCCATTTTTGGTGTATGAGTTGATGGAAAAGGGAAGCATAGATAAGATTTTAAAAGAGGAGGAAGAGGCGATTGCATTTAATTGGAAAAGGAGGGTTGATGCCATTAAAGGTGTGGCAAATGCTTTATGCTATATGCATAATGATTGTTCACCTCCAATTGTTCATCGAGATATATCAAGCAAGAATGTTCTTTTGAATTTGGAGTATGTGGCTCATGTCTCAGATTTTGGAACGGCCAAGCTTCTAAATCCTAATTCAACCAATTGGACCTCATTCGTGGGAACATTTGGATATGCTGCTCCAGAACTTGCGTACACAATGGAAGCAAATGAAAAATGCGATGTGTATAGCTTTGGGGTATTGGCACTGGAAATAGTTTTTGGAGAGCACCCTGGAGAGTTTGTAAGTTGGTTAGTGTCTGCATCGAATATGATGGAGTCAACACTTGACATTTCTTCATTTCTGGGTAAGTTAGATGAACGTCTCCCACATCCTACAAAACCTATGGCTAAGGAGATAGATTCGATTGTAAGGATGGCAAATGCTTGTTTGACTGAAAATCCTCGTTCTCGCCCTACCATGGACCAAGTTGCCAACTACTTTTCAAAGTAG 2574 0.3831 MVFLFPTLVSMKLLSLWLLLLVMAPSLHATLSSSLSVQHTEANTLLKWKASLGNSSQTFLSSWDGNSSCNWLGIICDHSGSVSSINLTNMGLSGTLQPLNFSSFPNILTLDISLNNFTGSIPPQIGVFSKLTHLHLSYNYLTGPIPSEITQLVNLQVLRLEKNVFDGSIPDEIGALRNLRDISIQIANLTGTIPKSIGNLTSLLFLDFSQNNLYGHIPHEIGNLSNLKQLWLRNNNLHGSIPREICAVPKSLKNCSSLWRVWLEQNQLSGNVTEDFGVYPNLDYIDLSHNNFYGHLSPKWGKCHNLTSLKISNNNLSGSIPPELIQATNLHVLELSSNHLVGDIPEDLGNLTYLFKLSLNNNNLSGNVPIQIASLLDLDTLELGANRFSGLIPTQLGNLAKLLHLNLSRNKFVENIPSEFGKLKYLQNLDLSMNTLSGKIPPVLGELKSLETLNLSHNHLSGDLSGLDEMRSLISIDISYNQLQGPLPNIPAFKMATIEALRNNKGLCGNVSGLEPCPTSPDNYENHHKTNRFILVFLPIGLGTSMLALFVFGVSYHYYRSSKKKVQEDEESPGQNLFSIWSFDGKMVYDFGGQGSVYKAELQTGQVVAVKKLHSVQNGEMSDVKAFTSEIQALTEIRHRNIVKLYGYCSHSRFPFLVYELMEKGSIDKILKEEEEAIAFNWKRRVDAIKGVANALCYMHNDCSPPIVHRDISSKNVLLNLEYVAHVSDFGTAKLLNPNSTNWTSFVGTFGYAAPELAYTMEANEKCDVYSFGVLALEIVFGEHPGEFVSWLVSASNMMESTLDISSFLGKLDERLPHPTKPMAKEIDSIVRMANACLTENPRSRPTMDQVANYFSK 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00993 857 Pfam Protein kinase domain 592 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00993 857 Gene3D Ribonuclease Inhibitor 248 520 IPR032675 -
Vian2g00993 857 PANTHER LEUCINE RICH REPEAT KINASE 2 173 855 - -
Vian2g00993 857 Gene3D Phosphorylase Kinase; domain 1 579 661 - -
Vian2g00993 857 SUPERFAMILY Protein kinase-like (PK-like) 591 854 IPR011009 -
Vian2g00993 857 Gene3D Ribonuclease Inhibitor 192 247 IPR032675 -
Vian2g00993 857 ProSiteProfiles Protein kinase domain profile. 583 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00993 857 ProSitePatterns Tyrosine protein kinases specific active-site signature. 707 719 IPR008266 GO:0004672|GO:0006468
Vian2g00993 857 SUPERFAMILY L domain-like 250 509 - -
Vian2g00993 857 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 245 521 - -
Vian2g00993 857 FunFam MDIS1-interacting receptor like kinase 2 662 857 - -
Vian2g00993 857 FunFam Nuclear pore complex protein NUP107 38 194 - -
Vian2g00993 857 SUPERFAMILY RNI-like 84 324 - -
Vian2g00993 857 Pfam Leucine rich repeat N-terminal domain 40 77 IPR013210 -
Vian2g00993 857 Gene3D Transferase(Phosphotransferase) domain 1 662 857 - -
Vian2g00993 857 FunFam Leucine-rich repeat receptor protein kinase MSP1 568 661 - -
Vian2g00993 857 Pfam Leucine rich repeat 378 436 IPR001611 GO:0005515
Vian2g00993 857 Pfam Leucine rich repeat 280 340 IPR001611 GO:0005515
Vian2g00993 857 PRINTS Leucine-rich repeat signature 426 439 - -
Vian2g00993 857 PRINTS Leucine-rich repeat signature 447 460 - -
Vian2g00993 857 Gene3D Ribonuclease Inhibitor 39 191 IPR032675 -
Vian2g00993 857 ProSiteProfiles Leucine-rich repeat profile. 449 471 IPR001611 GO:0005515
Vian2g00993 857 SMART LRR_typ_2 152 176 IPR003591 -
Vian2g00993 857 SMART LRR_typ_2 328 351 IPR003591 -
Vian2g00993 857 SMART LRR_typ_2 303 327 IPR003591 -
Vian2g00993 857 SMART LRR_typ_2 224 248 IPR003591 -
Vian2g00993 857 SMART LRR_typ_2 447 470 IPR003591 -
Vian2g00993 857 SMART LRR_typ_2 399 423 IPR003591 -
Vian2g00993 857 SMART LRR_typ_2 200 223 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00993 Vian-Chr2 17064107 17073025 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00993 98 755 Receptor kinase-like Gene Family AT4G08850 43.714 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian2g00993 Pkinase 4.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00993 - - gmx:100780938 1089.33