Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00982 ATGTTTTGTAATTGTTTTGGTGCTTTGAATTGTTTTGGAAGGAGGGATGATCCTGCGGACCAGCCACATGAACAAGCTGTTGCAACTAAAAAGTTTAGCTATAACTCATTGAGATCAGCAACAAACGATTTTCACCCATCGTGCAAAATTGGTGGAGGAGGTTATGGAGTTGTCCACAAGGGAGTTTTAAGGGATGGTACTCGGGTTGCTATCAAGTCTCTTTCTGTTGAGTCTAAACAAGGGGCTCATGAATTTATGACAGAAATTGATTTGATATCAAATATACGACATCCAAATCTTGTGGAACTGATTGGCTGCTGTATTGAGGGTAGTAATCGAATACTGGTTTATGAGTTTATGGAGAACAATAGCCTTGCAAGCTCTTTGCTTGGTTCAAAAAGTAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGTCGTGGCACAGCTTCTGGTCTACGTTTTCTTCATGAAGAGGCTCAACCAAACATTGTTCATAGGGATATCAAGGCCAGTAACATATTGTTGGATGGGAATTTTAATCCGAAAATTGGGGACTTTGGTCTTGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCAGGAACTGTGGGATATCTTGCACCAGAATATGCACTTCTGGGACAACTTACAAAGAAGGCAGACGTTTACAGTTTTGGGATTCTCATGCTTGAAGTAATCAGTGGGAAAAGTAGTAGCATAGCTGCATTTGATGAGGACTATTTGGTTTTGGTGGAATGGGCTTGGAAGCTGAAAGAAGAAAATAGGCTTCTAGACCTTGTTGATTCAGAAGTAAGTGAGTATGATGAGAGTGAGGTGTATCGGTTCCTTGTGGTGGCTCTATTTTGCACCCAATCAGCTGCTCAGCATAGACCAAGCATGAAACAAGTATTGAAAATGCTTTCCAAAGAAGTTCATCTTAATGAGAAGGCTTTGACTGAGCCTGGAATATACAGATGGCACAGCACTGGAAAAAGGGGTGGTTCTTTGAATGAGACATCATCTCAGGCAATCAAGCCCAGAAAAACTGGAAATCCACATGAAGCAGCTTCAGCTCACTTCAGTGGTACAGATATTGTGACAGAGATGCTTCCAAGATGA 1140 0.414 MFCNCFGALNCFGRRDDPADQPHEQAVATKKFSYNSLRSATNDFHPSCKIGGGGYGVVHKGVLRDGTRVAIKSLSVESKQGAHEFMTEIDLISNIRHPNLVELIGCCIEGSNRILVYEFMENNSLASSLLGSKSKYVALDWPKRAAICRGTASGLRFLHEEAQPNIVHRDIKASNILLDGNFNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLEVISGKSSSIAAFDEDYLVLVEWAWKLKEENRLLDLVDSEVSEYDESEVYRFLVVALFCTQSAAQHRPSMKQVLKMLSKEVHLNEKALTEPGIYRWHSTGKRGGSLNETSSQAIKPRKTGNPHEAASAHFSGTDIVTEMLPR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00982 379 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 343 - -
Vian2g00982 379 CDD STKc_IRAK 50 316 - -
Vian2g00982 379 MobiDBLite consensus disorder prediction 339 354 - -
Vian2g00982 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Vian2g00982 379 ProSiteProfiles Protein kinase domain profile. 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00982 379 MobiDBLite consensus disorder prediction 336 364 - -
Vian2g00982 379 Pfam Protein tyrosine and serine/threonine kinase 48 314 IPR001245 GO:0004672|GO:0006468
Vian2g00982 379 SUPERFAMILY Protein kinase-like (PK-like) 25 314 IPR011009 -
Vian2g00982 379 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Vian2g00982 379 Gene3D Transferase(Phosphotransferase) domain 1 120 328 - -
Vian2g00982 379 SMART serkin_6 44 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00982 379 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 19 119 - -
Vian2g00982 379 Gene3D Phosphorylase Kinase; domain 1 14 119 - -
Vian2g00982 379 FunFam Putative LRR receptor-like serine/threonine-protein kinase 120 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00982 Vian-Chr2 16841242 16846572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00982 27 329 Receptor kinase-like Gene Family AT1G56120 52.475 3.98e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian2g00982 PK_Tyr_Ser-Thr 8.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00982 - - gmx:100816683 667.537