Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00976 ATGGGGTTTGGTCTGAAAAGGAGGAAGAGGAGAGGAGAAGCAGAGGAAGAAGGAAGGATGCGCAAGTCTTTCAAGGATTCGCTCAAAGCTCTTGAAGCTGATATCCAGTTTGCCAACACACTAGCTTCTGAGTATTCAAGTGGAGGTGCCAGCTTCCAAATGAGATTGTCCTACAGTCCAGCTGCTCAATTCTTCCTTTTTCTTGTTCAGTGGACTGACTGTCACCTTGCTGGAGCCTTAGGATTGCTCCGAATTCTAATATACAAGGCTTATGAAGATGGAAAGACAACCATATCCATTTACGAAAGAAAAGCCAGTCTAAAGGAATTCTATGGTGTGGTGTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGAAGACCGAAAACAAAAACATCTATGTGCTACTAAGTATAATCTTAAAGATTTGACAAGCAAAGGAAAGTTTTCTGAAACTGACATTGAGAGAGAAGAAGAGTGTGGTATTTGCTTGGAGATGAACAGCATGGTTGTATTGCCCAACTGCTATCATTCAATGTGTATGGAATGCTACCAAGACTGGCATGCAAGATCTCAATCTTGTCCTTTCTGTCGAGACAGTCTCAAAAGAGTAAACTCTGATGATCTTTGGATCTACATTAGCAGCAGTGAGATCAATGACTTGGCTTCAATCAACAAGGAGAATTTGAAAAGATTGTTCATGTACATAGAAAGTTTGCCTGTAATTGCCAGATCCTACATTCACCATCTCATATCATCACCATTAGTGATTGCCAATTAG 789 0.4068 MGFGLKRRKRRGEAEEEGRMRKSFKDSLKALEADIQFANTLASEYSSGGASFQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKAYEDGKTTISIYERKASLKEFYGVVFPSLLQLHRGITDVEDRKQKHLCATKYNLKDLTSKGKFSETDIEREEECGICLEMNSMVVLPNCYHSMCMECYQDWHARSQSCPFCRDSLKRVNSDDLWIYISSSEINDLASINKENLKRLFMYIESLPVIARSYIHHLISSPLVIAN 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00976 262 FunFam RING/U-box superfamily protein 144 210 - -
Vian2g00976 262 ProSitePatterns Zinc finger RING-type signature. 178 187 IPR017907 -
Vian2g00976 262 Pfam Zinc finger, C3HC4 type (RING finger) 160 206 - -
Vian2g00976 262 SUPERFAMILY RING/U-box 152 206 - -
Vian2g00976 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 211 IPR013083 -
Vian2g00976 262 PANTHER RING FINGER PROTEIN 41, 151 22 245 - -
Vian2g00976 262 ProSiteProfiles Zinc finger RING-type profile. 163 201 IPR001841 -
Vian2g00976 262 SMART ring_2 163 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00976 Vian-Chr2 16717979 16720831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00976 107 208 C3H Transcription Factor Family AT5G01960 28.972 1.69e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00976 K25840 - gmx:100814293 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00976 2 16717979 16720831 Vian2g00976 2 16717979 16720831 ECH