Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00971 ATGGCTTCTCACCAACACGAACCATGGCTACTGGAGAACGGAAACCCGAAGGTCTTGACCAGGGAAATGAGACATGGTCGCACTGCGCATAGCAAGTCTTCCAACTCACTTCGCAAGAAGTCTGATCGCACTCTTGTTTCTAAGGTTCCCTGTGCCACTATCCGAAACATACTTTTCAACTTGCAAGAGGTTATTCTTGGCACCAAGCTTTCCATTCTCATCCCTGCCATTCCTGCTGCCATTGTTGCTGAGTACTGTGGCTTTGGAAGACCTTGGGTTTTCGTGTTGAGCTTGCTTGGACTTACCCCACTTGCTGAACGTGTGAGCTTCATAACCGAACAAGTTGCCTTCTACACTGGTCCTACAGTTGGAGGACTTCTGAACGCTACGTGTGGGAATGTTACGGAGCTCATAATAGCAATATTTGCGCTTAGCAGTAACAAAATTGCTGTGGTCAAGTATTCTCTGTTGGGTTCTATTCTTTCAAACCTTCTTCTGGTTCTTGGCACCTCTCTATTATGTGGTGGCATTGCAAACCTTAGAGTGGAACAAAAATATGATAGAAGACAAGGAGATGTGAACTCACTTATGCTGCTGTTGGCATTGTTGTGCTACTTACTTCCAATGCTGTTCAAATATAGCGCTGCCTCAGCTGCTCTCACTGTTGATCCTTCACTCCACTTGTCTAGAGCTTCTAGCATTGTGATGCTGATTGCATATGTTGTTTACATAATCTTTCAACTGTGGACACACAGGCAACTATTTGAAGCTGAAGATGAGGATGAAGATGACAGCAATGGTTCAGATGAACAAGCCGTCATTGGACTCTGGAGTGGCATTGCTTGGCTGATTGGGATGACTGTGTTCATTGCTCTGTTGTCTGAATACGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTTTGTCTGTGAGCTTCCTCAGCATAATCTTGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAGTCATATTTGCTTTCAAGAACAAGCTGGACATCTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGTGGTCCCTTTGTGTGTGATCGTTGCTTGGACTATGGGTGTCAAAATGGATTTGAACTTCAACATCCTAGAGACAGGTTCCGTTGCTTTGGCAATAATAGTCACAAGCTTTACTTTACAGGATGGTACTTCTCACTACTTGAAAGGCCTTGTTCTCCTGCTGTGCTACATAGTTATTGGAGCTTGCTTCTTCGTACAAAGAACACCATTGAACCAAGCTGATGCTACAAACGTCATTCCTAAAGCAGCCATTAATGCAGTTTTAAGTGCTTAG 1347 0.4447 MASHQHEPWLLENGNPKVLTREMRHGRTAHSKSSNSLRKKSDRTLVSKVPCATIRNILFNLQEVILGTKLSILIPAIPAAIVAEYCGFGRPWVFVLSLLGLTPLAERVSFITEQVAFYTGPTVGGLLNATCGNVTELIIAIFALSSNKIAVVKYSLLGSILSNLLLVLGTSLLCGGIANLRVEQKYDRRQGDVNSLMLLLALLCYLLPMLFKYSAASAALTVDPSLHLSRASSIVMLIAYVVYIIFQLWTHRQLFEAEDEDEDDSNGSDEQAVIGLWSGIAWLIGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIAMFVVPLCVIVAWTMGVKMDLNFNILETGSVALAIIVTSFTLQDGTSHYLKGLVLLLCYIVIGACFFVQRTPLNQADATNVIPKAAINAVLSA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00971 448 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 24 426 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vian2g00971 448 FunFam Vacuolar cation/proton exchanger 121 265 - -
Vian2g00971 448 NCBIfam calcium/proton exchanger 56 422 - -
Vian2g00971 448 NCBIfam calcium/proton exchanger 74 422 IPR004798 GO:0006816|GO:0015369
Vian2g00971 448 Gene3D - 121 276 IPR044880 -
Vian2g00971 448 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016020|GO:0055085
Vian2g00971 448 Pfam Sodium/calcium exchanger protein 280 417 IPR004837 GO:0016020|GO:0055085
Vian2g00971 448 FunFam Vacuolar cation/proton exchanger 267 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00971 Vian-Chr2 16571778 16574556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00971 1 430 Antiporters AT2G38170 69.248 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00971 K07300 - gmx:100816231 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00971 2 16571778 16574556 Vian2g00971 2 16571778 16574556 ECH
Vian2g00971 2 16571778 16574556 Vian9g01063 9 21804805 21808838 PCT