Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00929 ATGAAATTGGAAGCCAAAACCGTCGACCCCTACAAGGTTCTTGGGGTCGATAAGAATGCAAGTCAGCGGGAAATTCAGAAGGCTTTCCACAAGTTGTCTCTCCAGTATCACCCTGACAAGAACAAAGCCAAGAGTGCGCAAGAGAAGTTTGCTCAGATCAATAATGCCTATGACATTTTATCTGATGAAGAGAAGAGAAAGAATTATGACATGTATGGTGATGTAAATGGTAATCCTGGATTTCCTGGTGGCCATCCTGGATTTCAAGGTGGCCATCCTGGATTTCAAGGTGGTCATCCCGGAGGTCGTGGTGGATATACTTACTTTACAGAGGGTGGTCCTGGACAAAGCCATTTTAACTTCAAATCAGGGGGAGATTGGCAAGGAGGATCTAAGTCATTCTCCTTTTCCTCTGGTGGCTCGGGTGGTTCCAATTCTTTTGGGTTTGGCTTGGATGATATTTTTGGCAGTATTTTTGGTGGTGGAGGTGCTGGGAGTCAGTTTGGTGGTTTTGGCAGTTCAGCTAATACTGAAGGGACGTCCACAGCTTCTCCCCAACGTCTCACATCTATAAATTCACGTATCTACAAGAAAGAGATAGAAAATGCAGGGATGACTTGGATTTTGTTGTCTTATAGACCTAAAAGTGCATCGAAGAATATCCAATACTTTGAGTCCACTGTAGAGGAGGTTGCCAGTACATTACAGGGAGCTGTGAAGGTTGGAAGCATTAACTGTGATAAGGAAGTCTCGTTGTGTAAAGAGCTTGGCATGTATCCACAAAATGCTCCTAGAATTTTTGTTTTTTCTTACAAGGAGAATGAAATAGGTTCTTTGGTGGAGTACAGTGGACACTTGGCTGCTAAGAATTTGAAGGCTTTCGTTCAAGAACACTTGCCAAGGTTTTCCAAGCGAACCAACTTGAATAATCTGGACCAATTTAGCACTACGGCAAAGTTGCCTAGGGTGCTGCTTCTCTCCACCAAGAAGGACACTCCAGTAATTTGGCGTGTTCTTAGTGGCTTGTTTCACAAACGCATTATTTTCAGTGATGCACAGGTGGACGATGTTTCTGATCTAAGAATAAAAAGTCTAGGAGTTGATGCACTTCCATCAATTGTTGGTTGGCTACCTAATGGAGAGAAACGTGTTCTGAAAACTGGGATTTCTGTAAAAGATTTAAAATCTGCAGTTCTCGATCTTAGTAAAATACTTGATAGTTTTGTAGAGGCAAGTAAAAAGGAAGCATCAGCTCAGGCCAAGAAGGCAAAAACTGATCCAGACGACGGACGCATACCATTGCTTTCTCAATCCAACTTTGAGGCTCTCTGTGGTGCTAAAGCTCCTGTCTGCATAATTGGCGCCTTCAGATCTTCTAAAGCCAGAGAAAAGCTAGAATCAATCCTCTCTTTGGTCTCTCAAAAATCTTTGTCAAGAAGACCAAATGGTGGGAGCAGCAGCTCTAGGGACTCCATTTCTTATGCTTTATTAGATGCTGCAAAGCATCAGTCATTTCTAAAGGCATTTGACAAAACAGGTTATAAATCATCAGATAAGTTGTTGATTGCTTACAAACCTCGTAGAGGAAAGTACAGTGTATTTAGGGATGAAATGACAATAGAGGAGGTAGAGAATTTCGTTGCCTCCGTTCTCAGTGGAGATATACCCTTCAGAGAAACGAGTGGGAAGGCTGTACTAGAGCATTAG 1707 0.4253 MKLEAKTVDPYKVLGVDKNASQREIQKAFHKLSLQYHPDKNKAKSAQEKFAQINNAYDILSDEEKRKNYDMYGDVNGNPGFPGGHPGFQGGHPGFQGGHPGGRGGYTYFTEGGPGQSHFNFKSGGDWQGGSKSFSFSSGGSGGSNSFGFGLDDIFGSIFGGGGAGSQFGGFGSSANTEGTSTASPQRLTSINSRIYKKEIENAGMTWILLSYRPKSASKNIQYFESTVEEVASTLQGAVKVGSINCDKEVSLCKELGMYPQNAPRIFVFSYKENEIGSLVEYSGHLAAKNLKAFVQEHLPRFSKRTNLNNLDQFSTTAKLPRVLLLSTKKDTPVIWRVLSGLFHKRIIFSDAQVDDVSDLRIKSLGVDALPSIVGWLPNGEKRVLKTGISVKDLKSAVLDLSKILDSFVEASKKEASAQAKKAKTDPDDGRIPLLSQSNFEALCGAKAPVCIIGAFRSSKAREKLESILSLVSQKSLSRRPNGGSSSSRDSISYALLDAAKHQSFLKAFDKTGYKSSDKLLIAYKPRRGKYSVFRDEMTIEEVENFVASVLSGDIPFRETSGKAVLEH 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00929 568 CDD PDI_a_family 224 295 - -
Vian2g00929 568 PRINTS DnaJ domain signature 11 29 IPR001623 -
Vian2g00929 568 PRINTS DnaJ domain signature 29 44 IPR001623 -
Vian2g00929 568 PRINTS DnaJ domain signature 45 65 IPR001623 -
Vian2g00929 568 PRINTS DnaJ domain signature 65 84 IPR001623 -
Vian2g00929 568 SMART dnaj_3 8 65 IPR001623 -
Vian2g00929 568 CDD DnaJ 9 62 IPR001623 -
Vian2g00929 568 ProSiteProfiles dnaJ domain profile. 9 73 IPR001623 -
Vian2g00929 568 ProSitePatterns Nt-dnaJ domain signature. 50 69 IPR018253 -
Vian2g00929 568 SUPERFAMILY Chaperone J-domain 5 108 IPR036869 -
Vian2g00929 568 MobiDBLite consensus disorder prediction 79 110 - -
Vian2g00929 568 SUPERFAMILY Thioredoxin-like 186 300 IPR036249 -
Vian2g00929 568 Pfam DnaJ domain 9 70 IPR001623 -
Vian2g00929 568 Gene3D DnaJ domain 6 169 IPR036869 -
Vian2g00929 568 Coils Coil 43 63 - -
Vian2g00929 568 Gene3D Glutaredoxin 189 300 - -
Vian2g00929 568 Gene3D Glutaredoxin 432 558 - -
Vian2g00929 568 PANTHER DNAJ PROTEIN ERDJ3A 5 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00929 Vian-Chr2 15354070 15357142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00929 11 72 C2H2 Transcription Factor Family AT1G74250 39.706 7.13e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00929 - - gmx:100796871 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00929 2 15354070 15357142 Vian2g00929 2 15354070 15357142 ECH