Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00918 ATGAGGATGGAAGAAGAGAGACACGTCTCAGAATGTTCCAAGACAAGTCCTTCCAATGAAGAAGGTTGTGAAGAGAGTGAAGAGGAGAATGAAGATGAGAGTAAGCAGAACAACAATGGAGGAAGCTCAAGCAACAGCACTGTGGAAGAGAACGAGAAGAAGGCAACAGTGAGACCTTATGTTAGATCCAAGTTGCCTCGTCTACGTTGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACCCCAAAGTTGGTTCTTCAGTTGATGAATATCAAAGGTTTAAGTATTGCTCATGTCAAGAGTCATTTACAGATGTACAGGAGCAAGAAGGTGGAGGCAAATCAAGGTAGAATAAGATATGGATATGGGGATGCTTCTCTTGCTATCTATGAAAACATGGTGAAAACTTGCATGAATAGGAGTTCAGTTGATGAATCTGGAGCTGAATTTTGTGGCAGCAGATTGACTGAGAGAATTCATGGAACCAATAGTAACATGAATTGGAGTCATAATGTACTCCAAGTTGATTGTTCCGGTTTCAATGAATCCTTCTGCAGACCAATCAAAATGAACCAAGAAGATCCTCATCAATCTACAGAATTAATGCAGCCAAGTGCACAAGAACTCATGCCAAACAATGATATTGCTTCAAAAAATCTGGTGGAACTAAAGAGCTTGAAAAGGAAGGCTTCAGATTCTGACATTGATTTGAATCTGTCACTTAAATTAAGTTCAAGGGTCAGTGATGAGAAGCATGGAAGCATGGTGGAGCATGAAATTGATAGTAATCTATCACTGTCTTTGTGTTCTCAATCCTCCTCCTCTTATAATCTCAGCAGCAGGTTGAGAAAATCATCACAAGATCATTCTAAGGAGCAAGGGGAAAGAGGCAGAACATTGGATCTCACTATATGA 948 0.4051 MRMEEERHVSECSKTSPSNEEGCEESEEENEDESKQNNNGGSSSNSTVEENEKKATVRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVEANQGRIRYGYGDASLAIYENMVKTCMNRSSVDESGAEFCGSRLTERIHGTNSNMNWSHNVLQVDCSGFNESFCRPIKMNQEDPHQSTELMQPSAQELMPNNDIASKNLVELKSLKRKASDSDIDLNLSLKLSSRVSDEKHGSMVEHEIDSNLSLSLCSQSSSSYNLSSRLRKSSQDHSKEQGERGRTLDLTI 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00918 315 MobiDBLite consensus disorder prediction 1 21 - -
Vian2g00918 315 MobiDBLite consensus disorder prediction 1 58 - -
Vian2g00918 315 SUPERFAMILY Homeodomain-like 65 120 IPR009057 -
Vian2g00918 315 FunFam Myb family transcription factor 64 122 - -
Vian2g00918 315 NCBIfam myb-like DNA-binding domain, SHAQKYF class 66 121 IPR006447 GO:0003677
Vian2g00918 315 MobiDBLite consensus disorder prediction 290 315 - -
Vian2g00918 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 122 IPR017930 -
Vian2g00918 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 43 207 IPR046955 GO:0003700
Vian2g00918 315 MobiDBLite consensus disorder prediction 36 50 - -
Vian2g00918 315 MobiDBLite consensus disorder prediction 295 309 - -
Vian2g00918 315 Gene3D - 65 122 - -
Vian2g00918 315 Pfam Myb-like DNA-binding domain 68 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00918 Vian-Chr2 15130990 15132475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00918 57 134 G2-like Transcription Factor Family AT2G42660 74.359 4.14e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian2g00918 Myb_DNA-binding 8.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00918 - - gmx:100802192 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00918 2 15130990 15132475 Vian2g00918 2 15130990 15132475 ECH