Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00901 ATGAAGCAGGTAGTAGGAATGGTAGTTTCCAATAAGATGCAGAAATCTGTTGTGGTGGCAGTGGATAGACTATTCTACCACAAGGTGTATGATCGATATGTCAAGCGCACCTCCAAATTCATGGCTCATGATGAGAACAACCTCTGTAACATTGGTGACAAAGTTCGACTAAATCCTTCTAGGCCATTGAGCAAGCATAAACATTGGGTTGTTGCTGAAATTCTTAAGAAGGCACGGATATATGTTCCACCATCCACCCCAATGTTTAATAATGTCAGCTCCAGCTCTGAAGCACATGCTTCATAA 306 0.4183 MKQVVGMVVSNKMQKSVVVAVDRLFYHKVYDRYVKRTSKFMAHDENNLCNIGDKVRLNPSRPLSKHKHWVVAEILKKARIYVPPSTPMFNNVSSSSEAHAS 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00901 101 Gene3D - 1 97 IPR012340 -
Vian2g00901 101 SUPERFAMILY Nucleic acid-binding proteins 2 88 IPR012340 -
Vian2g00901 101 Hamap 30S ribosomal protein S17 [rpsQ]. 1 76 IPR019984 GO:0003735|GO:0005840|GO:0006412
Vian2g00901 101 NCBIfam 30S ribosomal protein S17 2 71 IPR019984 GO:0003735|GO:0005840|GO:0006412
Vian2g00901 101 PRINTS Ribosomal protein S17 family signature 20 43 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vian2g00901 101 PRINTS Ribosomal protein S17 family signature 52 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vian2g00901 101 PRINTS Ribosomal protein S17 family signature 62 69 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vian2g00901 101 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 80 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vian2g00901 101 FunFam 30S ribosomal protein S17 1 101 - -
Vian2g00901 101 Pfam Ribosomal protein S17 6 73 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00901 Vian-Chr2 14617546 14617972 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00901 6 75 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 36.620 6.89e-06 40.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00901 K02961 - gmx:100794499 187.193