Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00900 ATGACCGTTACACTCTTCATCTTTCTCCTCTTCTTCTTTCGCCCCGTCTTTGCTCTCTCCTCTGACGGCATCGCGCTTCTCACTCTAAAATCGGCGGTGGACGCCTTCTCCGCTGCCGCCTTCTCCAACTGGAACGACGCCGACGCCACCCCTTGTCGGTGGTCCGGCATCACGTGCGCCAACATCTCCGGCCAGCTGGAGCCGCGCGTCATCGGCGTCACGATCTCCGGCAGGGGCCTCCGTGGCTACCTCCCGTCGGAACTCGGCACGCTGCTCTACCTCCGTCGCCTCAATCTCCACACCAACGCCCTCCGCGGCGCCATCCCGGCGCATCTATTCAACGCTACCGCGCTCCACAGCGTCTTCCTCCACGGTAACAACCTCTCGGGCACCCTCCCTCCCTCTGTCTGCACCCTCCCTCGCCTCGAAAACCTCGACCTCTCCGATAACGCCCTCTCCGGCGCAGTGCCCGACACGCTCCGAAATTGTTCCCAGCTCCAGCGGCTAATACTAGCCCGCAACAAATTCTCCGGCGTGATTCCGGCGAGTCCCTGGCCAGAGCTGAAAAACCTTGTCCAGCTCGACCTGTCATCGAACCTTCTGGAAGGTTCGATCCCGGACGAACTCGGGGAGCTTAAAACACTAACTGGAACCTTAAACCTTTCGTTCAATCACTTATCTGGTAAAATTCCTAAATCTCTTGGGAATTTGCCTGTTACGGTGAGTTTCGATCTCCGGAACAATGATTTGAACGGCGAGATTCCCCAGACTGGGTCGTTTTCGAACCAGGGCCCCACTGCGTTTCTCAACAATCCGAACCTGTGTGGGTTTCCTTTGCAGAAACCATGCACAGGTTCAGCACCCAGCGAATTGGGGCGTGGTCCCAGTTCTCGTGGACCATCGGCGCACCGATCTGCGAAGGGGCTGAGTCCCGGTTTGATTATTTTGATCTCGGTGGCGGATGCGGCCGGGGTGGCCTTGATCGGGCTTGTGGGGGTGTATGTTTATTGGAAGAGGAAGGGCAAGTCCAATAGGTGTAGTTGCACTCTGAAGAGGAAGTTTGGTGGGGAGAACGAGAAAGCTAGTTTGTGTTGTTGGTGTAATGGGATGAAGAGTGATGATTCTGAAGTGGAGGAGGTGGAGAAGGAAGAGGGGGAGGGTGGGAAAGGGGAAGGGGATTTGGTGGCCATTGATAAGGGTTTTAACTTTGAACTTGATGAGTTGTTGAGGGCTTCTGCATATGTGTTGGGGAAGAGTGGGTTAGGGATTGTGTATAAGGTGGTCCTGGGGAATGGGGTGCCTGTGGCTGTGAGGAGATTGGGGGAGGGTGGGGAACAGAGGTATAAGGAGTTTGCTGCTGAGGTTCAAGCCATTGGCAAAGTGAAGCATCCCAACATTGTGAAGTTGAGAGCATATTATTGGGCTCCTGATGAGAAGCTTTTGATCAGTGATTTCATCTCCAATGGCAATTTGGCCACTGCCCTTAGAGATTTGTGGGACAATGGGACCAAAATGTTTCTCAGTTATCACAAACTCCGCAGACCGTATTTCTTAAAACTGATCAGCATCACAGGCAACAACCCATCCTCTGGTGGCTTTATGGGAGGAGCTCTTTCGTACTTGAAGCCATCACAAACAGAGCGAACTAACAACTACAAAGCTCCAGAAGCTCGAGTTCCCGGTTGCAGACCCACCCAGAAATGGGATGTATATTCATTTGGAGTTGTATTACTTGAATTGCTAACTGGAAAGTCCCCAGATTCTTCTCTGGCAGCATCAACATCCATGGAAGTCCCTGATTTGGTGAGGTGGGTCAGGAAAGGGTTTGAACAAGAAAGTCCATTGTCTGAAATGGTCGATCCGTCAATGCTCCATGAAGTGCAAGCCAAGAAAGAAGTACTAGCTGTGTTTCATGTAGCACTACAATGCACTGAGGGAGACCCTGAGATCAGGTCTAGGATGAAAACCGTCTCTGAAAATCTAGAAAGAATTGGATCATAA 2001 0.5242 MTVTLFIFLLFFFRPVFALSSDGIALLTLKSAVDAFSAAAFSNWNDADATPCRWSGITCANISGQLEPRVIGVTISGRGLRGYLPSELGTLLYLRRLNLHTNALRGAIPAHLFNATALHSVFLHGNNLSGTLPPSVCTLPRLENLDLSDNALSGAVPDTLRNCSQLQRLILARNKFSGVIPASPWPELKNLVQLDLSSNLLEGSIPDELGELKTLTGTLNLSFNHLSGKIPKSLGNLPVTVSFDLRNNDLNGEIPQTGSFSNQGPTAFLNNPNLCGFPLQKPCTGSAPSELGRGPSSRGPSAHRSAKGLSPGLIILISVADAAGVALIGLVGVYVYWKRKGKSNRCSCTLKRKFGGENEKASLCCWCNGMKSDDSEVEEVEKEEGEGGKGEGDLVAIDKGFNFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNIVKLRAYYWAPDEKLLISDFISNGNLATALRDLWDNGTKMFLSYHKLRRPYFLKLISITGNNPSSGGFMGGALSYLKPSQTERTNNYKAPEARVPGCRPTQKWDVYSFGVVLLELLTGKSPDSSLAASTSMEVPDLVRWVRKGFEQESPLSEMVDPSMLHEVQAKKEVLAVFHVALQCTEGDPEIRSRMKTVSENLERIGS 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00900 666 SMART LRR_typ_2 91 115 IPR003591 -
Vian2g00900 666 SMART LRR_typ_2 188 212 IPR003591 -
Vian2g00900 666 SMART LRR_typ_2 139 162 IPR003591 -
Vian2g00900 666 SUPERFAMILY Protein kinase-like (PK-like) 415 661 IPR011009 -
Vian2g00900 666 Gene3D Ribonuclease Inhibitor 20 184 IPR032675 -
Vian2g00900 666 ProSiteProfiles Protein kinase domain profile. 410 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00900 666 FunFam Leucine-rich repeat receptor-like protein kinase 19 182 - -
Vian2g00900 666 Pfam Protein tyrosine and serine/threonine kinase 542 661 IPR001245 GO:0004672|GO:0006468
Vian2g00900 666 Pfam Protein tyrosine and serine/threonine kinase 416 498 IPR001245 GO:0004672|GO:0006468
Vian2g00900 666 Gene3D Transferase(Phosphotransferase) domain 1 516 664 - -
Vian2g00900 666 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Vian2g00900 666 Gene3D Ribonuclease Inhibitor 185 284 IPR032675 -
Vian2g00900 666 FunFam Leucine-rich repeat receptor-like protein kinase 190 285 - -
Vian2g00900 666 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Vian2g00900 666 PANTHER OS05G0588300 PROTEIN 166 664 - -
Vian2g00900 666 FunFam Leucine-rich repeat receptor-like protein kinase 393 485 - -
Vian2g00900 666 SUPERFAMILY L domain-like 21 280 - -
Vian2g00900 666 PRINTS Leucine-rich repeat signature 142 155 - -
Vian2g00900 666 PRINTS Leucine-rich repeat signature 188 201 - -
Vian2g00900 666 Gene3D Phosphorylase Kinase; domain 1 398 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00900 Vian-Chr2 14608861 14613205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00900 15 664 Receptor kinase-like Gene Family AT1G67510 62.323 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian2g00900 PK_Tyr_Ser-Thr 3.5e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00900 - - gmx:100795021 1102.43