Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00898 ATGAAACCATTCCCGCCACGTGTCACAACCCCAGATGCTCATCAGCCTCTCCAACACCATCCGAAGCGCATGAAGACCAATACTAACATTTCTGGGGAGAGGAAATCGCGTAAGAGGCGCAGTAGTGGAAGTGATTCTTTGGAGAACACTCTTGAAAAGTGGAAGGAGTATAACAGGCAGCAACAACTTGGGTCAAGAGAGAATGGGGTGGAAGTGATTCAGAAAGCTCCAGCAAAAGGGTCGAGAAAAGGGTGCATGAGAGGTAAGGGAGGGCCTCAGAACTCCGATTGCAAGTTCAGAGGTGTGAGGCAGAGAATTTGGGGAAAATGGGTTGCTGAGATTCGCGAACCAATCAATGGCAAGCTTGTGGGTGAAAAAGCAAATAGACTTTGGCTTGGTACTTTCTCCACTGCACTTGAAGCTGCTCTTGCTTATGATGAAGCTGCTAAGGCCATGTATGGCCCTTCTGCGCGTTTGAATTTTCCAGACCCTTCTGTGGAGCCAATACACTCTAACGGATCATCATCATCTAGTGGATGTGATAAAAAATCACCTAGTGGTTCTTCAGAGAATGACGGTGATGTTGAAAGAGCTGAGTCGGAAAGGAACCTTCATCAGCCTAATGAAGAGAAACCAAGATTTTCTGAGGTTGGTGTTTTTGAGGTAACACAAGAGAAACTGGTTCTTTGTGGAGGTTGTGTAGCTGATGACTCGATAGAGGAGTTGAAGGAAATGACAAGTGGCTTTGAACAATGTCAAACAAGTGAGGAATGTAAGGCAATAACTTCGAAGAATATTAAGTCTGAAATACCTGAAGAAAGTGAAGGGATAGAGAGAGAATTGGAGAGGGTTCTGAAAAATTCTGGCATAGGTGAAGAGGATAATCTCTTGCATAATGAGCCTTTGGACATAGCCATGAATACAGGAGCTAACTACTGTAGCTCTTCTGATGCTGCTGAACATGACATTGTGGAGAAGAGTGAAGAAACAAGAGGAGAATCAGTTGAAACTTTGAAACAATGTGAGTTAAGCTGCAGCAACCATTGCCTTGGATGTATGCATAACATGCTGCCAGATAGCAATTCAAAACCACATTCTGAGCACTTTAATAACGACCGATCTGAGGCATCCATAGCAAGAAAACATACCGAGGAAGTAATTTCTGAAATCCTGGGGCTGTGTCACAGCAAGTGCTTGAAGATTAATCATGATCAGTCACCACATGAGCATTATAGAACTGAACATTTTGATGACACGAGAACTAAGCTTAAGTGTTTGGAATGCAAGCTGAGAGCACATTCTATTCATTACAAAACTCAGGCACCCATAGTTGGGGATTCCAATTATCCTTCAATGCAAGGAATTCATATGTTTGGTAGTGGCACTGTTGGACCAATTGAAAGCATGTCCCAAATTGATGCTATGAACAACATCAACACAAGCAGAAATTCCCTACCTGGATTTAGTTCTGGGCACAGTAGGAAGTTGTGTGATCTTTCTCAGCAGCTACACAAACTTGGTGGTTGCCTTCCAGAGCATTGGAATAATATGCAGTTTGCAGACTTGGAAGTGGGTTATGATTATAGTTTCTTAAATCCTGATTATGATTTTGGCTTATTGGAGGAGAAGAAGTTACTTGATGTATGCTTTCCCCAAATAGGATCCTAG 1668 0.4287 MKPFPPRVTTPDAHQPLQHHPKRMKTNTNISGERKSRKRRSSGSDSLENTLEKWKEYNRQQQLGSRENGVEVIQKAPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKLVGEKANRLWLGTFSTALEAALAYDEAAKAMYGPSARLNFPDPSVEPIHSNGSSSSSGCDKKSPSGSSENDGDVERAESERNLHQPNEEKPRFSEVGVFEVTQEKLVLCGGCVADDSIEELKEMTSGFEQCQTSEECKAITSKNIKSEIPEESEGIERELERVLKNSGIGEEDNLLHNEPLDIAMNTGANYCSSSDAAEHDIVEKSEETRGESVETLKQCELSCSNHCLGCMHNMLPDSNSKPHSEHFNNDRSEASIARKHTEEVISEILGLCHSKCLKINHDQSPHEHYRTEHFDDTRTKLKCLECKLRAHSIHYKTQAPIVGDSNYPSMQGIHMFGSGTVGPIESMSQIDAMNNINTSRNSLPGFSSGHSRKLCDLSQQLHKLGGCLPEHWNNMQFADLEVGYDYSFLNPDYDFGLLEEKKLLDVCFPQIGS 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00898 555 MobiDBLite consensus disorder prediction 26 55 - -
Vian2g00898 555 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 33 333 - -
Vian2g00898 555 MobiDBLite consensus disorder prediction 187 216 - -
Vian2g00898 555 FunFam Ethylene-responsive transcription factor 2 97 163 - -
Vian2g00898 555 Pfam AP2 domain 97 154 IPR001471 GO:0003700|GO:0006355
Vian2g00898 555 ProSiteProfiles AP2/ERF domain profile. 98 162 IPR001471 GO:0003700|GO:0006355
Vian2g00898 555 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Vian2g00898 555 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Vian2g00898 555 Gene3D AP2/ERF domain 97 163 IPR036955 GO:0003700|GO:0006355
Vian2g00898 555 MobiDBLite consensus disorder prediction 1 97 - -
Vian2g00898 555 CDD AP2 97 163 IPR001471 GO:0003700|GO:0006355
Vian2g00898 555 SMART rav1_2 98 168 IPR001471 GO:0003700|GO:0006355
Vian2g00898 555 MobiDBLite consensus disorder prediction 167 186 - -
Vian2g00898 555 MobiDBLite consensus disorder prediction 163 216 - -
Vian2g00898 555 SUPERFAMILY DNA-binding domain 98 163 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00898 Vian-Chr2 14581522 14583873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00898 24 253 AP2-EREBP Transcription Factor Family AT2G40340 43.348 2.11e-43 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian2g00898 AP2 4.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00898 - - gmx:100500303 803.512