Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00887 ATGCATTTGTCCGTCACCTTTATACGCCTCTGCTTCACACTGAATTCTGACCCTTCATATCTTTCTACAAAAAAAAAATTCTTCTTTCTTTTCTCCCTCGCTTCTTTTCTCCCGAATATCATCTGGGTATTCCCTGGATTTTTCAGGGGTGCCCTTGTTTTCTTCATCGGAAATTGCTGTGACTGGGTTGCAAACATGGGAGGCTGTTGCAGCCACGAAGTTTCGGTTCGAGGGAAGGTGGAAAGCGAGATAGATGATAGAGAATATGAGTGTGATCATGAAAATCACGAGTCTTATGAACGTGGTGGAGCATTGGTGAGACTAATAGGATCTTCCAAGTGTGTTTCAATGCACACCCAACAGGGCCAGAAAGGTGTGAACCAAGATGCAATGACAGTTTGGGAGGACTTCGCAGGAGAAAAGGATGTGATTTTTTGTGGTGTGTTCGATGGCCATGGTCCTCTAGGCCACAAGGTTTCACAATTTATTCGTGACAATCTGCCCTCAAAACTGTCTGCAGCAATCGAAATTTCACAACAGAAAACAATAAAGTTTTATGATGCCACTGATGCAGAAACTGCTAGTTTTGAAGATGGCTACGATGACGGTAACCAGATGTCCCTTGCTTCATGGGAGGGATGCTTTCTGAAATCCTTTGATGAGATGGATGAGCACCTTGCTCGGGAAATTAACACTGACAGCTATTGCAGTGGTTGCACCGCTGTGACTTTAATTAAACAGGGCGACCAGCTGATAGTTGGCAATTTGGGTGATTCTCGTGCAGTTCTTTGCACAAGGGACAGGGACCAACTCGTTGCTGTTCAACTCACTGTTGACTTGAAACCAGAAATTCCAAGTGAAACCTCTAGAATCGTTAACTGTGAAGGAAGAGTGTTTGCAGCAGAAGAAGAACCAGATGTGTACAGAATATGGATGCCTGATGATGACTGCCCTGGACTGGCCATGTCAAGAGCCTTTGGGGACTTTTGCCTCAAAGATTATGGCCTCATATCAGTTCCTGATGTATTTTACAGAAAAATTACCCCACAAGATCAATTTGTGGTTTTGGCAACTGATGGGATATGGGATGTGCTCACTAACCATGAAGTAATAAGCATAGTTGCTTCAGCACCAAGGAGGTCCATCGCAGCCAAGTTGTTAGTGAAGCGTGCTGTAAAAGCTTGGAGATACAAATATCCTGGTTCCAAGGTTGATGATTGTGCTGCCATATGTTTGTTTTTGAATGAACAACCTGTTCAATCCAACTCACAATCCCATATGAGTAGACAAAATAGAAAGAGCAGCAAGAACTTGCATCACTCTAAAACCACTAGAAATGAAGACACTGAAACAGTGGATGGCAAGGTTGGGTTGGAAATAGATGAAGAATGGAAAGCTCTTGGAGGGTATTCGAGAGCAAACTCTTTGTCAAAACTTCCACGCCTTGCCAGGGGTATGAGTAAACGGCAATCGTCCAAGTACTATTCACCGCGTTGA 1497 0.4375 MHLSVTFIRLCFTLNSDPSYLSTKKKFFFLFSLASFLPNIIWVFPGFFRGALVFFIGNCCDWVANMGGCCSHEVSVRGKVESEIDDREYECDHENHESYERGGALVRLIGSSKCVSMHTQQGQKGVNQDAMTVWEDFAGEKDVIFCGVFDGHGPLGHKVSQFIRDNLPSKLSAAIEISQQKTIKFYDATDAETASFEDGYDDGNQMSLASWEGCFLKSFDEMDEHLAREINTDSYCSGCTAVTLIKQGDQLIVGNLGDSRAVLCTRDRDQLVAVQLTVDLKPEIPSETSRIVNCEGRVFAAEEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLISVPDVFYRKITPQDQFVVLATDGIWDVLTNHEVISIVASAPRRSIAAKLLVKRAVKAWRYKYPGSKVDDCAAICLFLNEQPVQSNSQSHMSRQNRKSSKNLHHSKTTRNEDTETVDGKVGLEIDEEWKALGGYSRANSLSKLPRLARGMSKRQSSKYYSPR 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00887 498 SUPERFAMILY PP2C-like 111 416 IPR036457 -
Vian2g00887 498 PANTHER PROTEIN PHOSPHATASE 101 412 IPR015655 GO:0004722|GO:0006470
Vian2g00887 498 Gene3D - 110 417 IPR036457 -
Vian2g00887 498 CDD PP2Cc 115 414 IPR001932 -
Vian2g00887 498 Pfam Protein phosphatase 2C 119 390 IPR001932 -
Vian2g00887 498 MobiDBLite consensus disorder prediction 422 454 - -
Vian2g00887 498 SMART PP2C_4 100 412 IPR001932 -
Vian2g00887 498 ProSiteProfiles PPM-type phosphatase domain profile. 114 414 IPR001932 -
Vian2g00887 498 MobiDBLite consensus disorder prediction 478 498 - -
Vian2g00887 498 MobiDBLite consensus disorder prediction 440 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00887 Vian-Chr2 14263954 14266997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00887 66 418 PP2C-type Phosphatase Gene Family AT5G01700 53.824 6.71e-132 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00887 - - vun:114185420 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00887 2 14263954 14266997 Vian2g00887 2 14263954 14266997 ECH