Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00877 ATGACCATGGGTGATCATAATAGTAACTGGGGAACTTCTGAATTTAATCATCATCAACTTGGACTTGATGTTCCAAAATTCAAGTCTGCTCAACCTCCTTCTCTACCTCTCTCTCCCTCTCCCCCTTCCCCTTCTTCTTACTTGCCTTTTTCATCTGCTTTCAGCCCATCTGAGTTCTTCAACTCTTCTTTGTTTTTGCCTTCTCCAAATATTTTTGCATCTCCTACTACTGAGGCTTTGGCTGCGCAGACCTTCAACTGGAGGAACGGTTCAGGAGAAGAAGAACAACAACGTGACAAAGAGGATGAGAAAAACTACTCGGACTTCTCTTTCCAAACCCAAATTCAATCTTCCTCAGGCATGCTTCAAGTGCAGGAACCTCTTAAGAAGCAAGATATGTGGAAATTCAATGAACCTTCAAAGCAAACTGATTATTCATCTGAGAGGACAGCAACAAAATCTGAATACCCTCCGATTCAGAGCTTTTCCGCAGAAATGGCATCGCACAAATCAGAATTACAAAGCAATTCAGTTCCTGGGTCTGGTCGTTTTAATTACGCCAATGCATCTCAGTCTGTTAGAGAACAAAAGAGATCGGAAGACGGATTCAACTGGAGAAAATATGGACAGAAACAAGTGAAAGGGAGTGAAAATCCTCGTAGTTATTACAAATGCACACATCCAAATTGCTCTGTGAAGAAGAAAGTTGAGAAGTCTTTGGATGGCCAAATTACTGAAATAGTGTACAAGGGCCATCATAACCACCCAAAACCACAGTCTACTAGAAGAACAAGCTCTCAATCAATTCATCAACCTTCTTCATCTTGCACAAACTCTGGGATTTCTGATCAATCAGTGGTGACCCTAGGCAATCCACAAATGGATCATTTCTCCATGAAGGAAGATTCTTCAGCTTCTGTAGGAGAGGAGGAGTTTGAACAAACATCCCAAACCAGTTATTCTGGGGGAGATGAAGATAACCTTGGACCAGAGGCAAAAAGATGGAAAGGAGATAATGAAAATGATGACTATTCCGCCTCAGGGAGTAGAACTGTGAGAGAGCCTAGAGTTGTAGTTCAAACCACAAGCGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTAGTGAAAGGAAATCCAAATGCAAGGAGCTATTACAAATGCACTGCCCCTGGTTGTTCAGTGAGAAAACATGTTGAGAGAGCTGCGCATGATATCAAAGCTGTGATCACAACCTATGAAGGGAAACACAACCATGATGTGCCTGCTGCACGTGGTAGCGCAAGTTATAACATGAACAGAAATCCTGTGAACAGCAGCATATCGGCTCCTATAAGACCCTCTGCAGTGAACTGTTATTCCAGCTCATCAGGTTTCAAAAATTCTCTCTACAATAATACCAAACTTCCAGCAACCAGAAATCAGGAATCTTTTGCACTGGACAAGTTCCAGAACCCTGGAAATTTTGGCCAATCGGCTCTCAACAAATCAATGAGTTCATACACGGATCATGCACCGTACTCACATGCTACATACTCAAATGCCAAGGATGAGAGAAAGGATGACTCCTTCCTTCAGTCATTTCTGTCAAAGGACTTCTGA 1620 0.4216 MTMGDHNSNWGTSEFNHHQLGLDVPKFKSAQPPSLPLSPSPPSPSSYLPFSSAFSPSEFFNSSLFLPSPNIFASPTTEALAAQTFNWRNGSGEEEQQRDKEDEKNYSDFSFQTQIQSSSGMLQVQEPLKKQDMWKFNEPSKQTDYSSERTATKSEYPPIQSFSAEMASHKSELQSNSVPGSGRFNYANASQSVREQKRSEDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKSLDGQITEIVYKGHHNHPKPQSTRRTSSQSIHQPSSSCTNSGISDQSVVTLGNPQMDHFSMKEDSSASVGEEEFEQTSQTSYSGGDEDNLGPEAKRWKGDNENDDYSASGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSASYNMNRNPVNSSISAPIRPSAVNCYSSSSGFKNSLYNNTKLPATRNQESFALDKFQNPGNFGQSALNKSMSSYTDHAPYSHATYSNAKDERKDDSFLQSFLSKDF 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00877 539 FunFam WRKY transcription factor 33 355 421 - -
Vian2g00877 539 Pfam WRKY DNA -binding domain 369 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian2g00877 539 Pfam WRKY DNA -binding domain 200 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian2g00877 539 MobiDBLite consensus disorder prediction 309 324 - -
Vian2g00877 539 FunFam WRKY transcription factor 188 259 - -
Vian2g00877 539 SUPERFAMILY WRKY DNA-binding domain 195 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian2g00877 539 MobiDBLite consensus disorder prediction 260 300 - -
Vian2g00877 539 SUPERFAMILY WRKY DNA-binding domain 360 428 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian2g00877 539 ProSiteProfiles WRKY domain profile. 194 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian2g00877 539 ProSiteProfiles WRKY domain profile. 363 428 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian2g00877 539 MobiDBLite consensus disorder prediction 249 352 - -
Vian2g00877 539 Gene3D WRKY domain 355 421 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian2g00877 539 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 108 446 IPR044810 GO:0003700
Vian2g00877 539 MobiDBLite consensus disorder prediction 327 349 - -
Vian2g00877 539 MobiDBLite consensus disorder prediction 173 193 - -
Vian2g00877 539 MobiDBLite consensus disorder prediction 173 203 - -
Vian2g00877 539 Gene3D WRKY domain 185 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian2g00877 539 MobiDBLite consensus disorder prediction 21 48 - -
Vian2g00877 539 MobiDBLite consensus disorder prediction 32 46 - -
Vian2g00877 539 SMART WRKY_cls 199 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian2g00877 539 SMART WRKY_cls 368 427 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00877 Vian-Chr2 14052689 14055130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00877 22 460 WRKY Transcription Factor Family AT2G38470 51.885 6.96e-115 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian2g00877 WRKY 1.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00877 K13424 - gmx:100776837 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00877 2 14052689 14055130 Vian2g00877 2 14052689 14055130 ECH