Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00845 ATGGCTTCTAGGGACAAAAGAAGAGAGTCTCTGGAACAGACTTTGCAACAACTTCGCGATGTCACAAACTCAACTGCTCTGAACAAAGCTTCAATCATTGCAGATGCCTCAAAATACATAGAGGAGTTGAAACAAAAAGTGGAGGGACTGAACTCAGAGCTGGGGATCACTGAATCATCATCAAACTCTCAAATTGATGAACTACCTGCGGTAACTGTGAAAACCCTAAAGAAGGGTTTCCTCATTAACGTGCTTTTAGAGAAGAATAGTCCTGGTATGCTCGTGTCTGTACTCGAAGCCTTCGAAGAACTTGGCCTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACAGTTTCCAGCTAGAAGCTGTGGGAAGAGAAAGTCACAAGAACGACAGTGTTGACGCGCAAGTGGTAAAGCAAGCAGTGTTGCAAGCAATCAAGAAGGAGGACTAA 456 0.4408 MASRDKRRESLEQTLQQLRDVTNSTALNKASIIADASKYIEELKQKVEGLNSELGITESSSNSQIDELPAVTVKTLKKGFLINVLLEKNSPGMLVSVLEAFEELGLDVLDARVSCEDSFQLEAVGRESHKNDSVDAQVVKQAVLQAIKKED 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00845 151 Gene3D - 3 59 IPR036638 GO:0046983
Vian2g00845 151 Coils Coil 1 21 - -
Vian2g00845 151 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 58 IPR036638 GO:0046983
Vian2g00845 151 Coils Coil 33 60 - -
Vian2g00845 151 CDD ACT_UUR-ACR-like 88 147 - -
Vian2g00845 151 ProSiteProfiles ACT domain profile. 82 151 IPR002912 -
Vian2g00845 151 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00845 Vian-Chr2 12840102 12841344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00845 25 145 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 28.058 2.12e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00845 - - vra:106759069 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00845 2 12840102 12841344 Vian2g00845 2 12840102 12841344 ECH
Vian2g00845 2 12840102 12841344 Vian2g03047 2 51131494 51132848 ECH
Vian2g00845 2 12840102 12841344 Vian7g01513 7 23939081 23940460 ECH
Vian6g00691 6 23702128 23702961 Vian2g00845 2 12840102 12841344 ECH
Vian2g00845 2 12840102 12841344 Vian6g00691 6 23702128 23702961 ECH