Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00834 ATGGAACAGAAGGGAGGTGTGCTTCTGCAAAAATATGAACTTGGTAGGTTATTAGGCCAAGGGAACTTCGCAAAGGTCTACCATGGTAGGAATCTGATAACTGGCATGAGTGTGGCCATTAAGGCAATTGATAAGGAAAAAATTTTGAAAGTTGGATTGGTTGATCAGATTAAGCGTGAAGTTGCAGTGATGAGATTAATCAGACATCGACATGTGGTTGAGCTTTATGAGGTAATGGCCACCAAAACCAAAATTTTCTTTGTCATGGAGCATGCAAAAGGTGGTGAGCTGTTCAACAAGGTACTCAAAGGAAGGCTGAAGGTGGATGCTGCTAGGAAATATTTTCAGCAACTGATTAGCGCTGTTGACTACTGCCATAGCAGGGGTGTGTGTCATAGAGACTTAAAGCCTGAAAATATACTTTTGGATGAAAATGATAATTTGATGGTTTCAGACTTTGGGTTGAGTGCCCTTACTGAATCCAAACGCCAAGATGGGTTGCTCCATACTGTATGTGGTACCCCTGCGTATGTTGCTCCAGAAGTGATAAGCAGAAAGGGTTACGATGGGATGAAAGCAGATATATGGTCATGTGGGGTAATCTTGTTTGTTCTGTTGGCTGGTCATCTTCCATTCCATGATTCAAATCTGATGGAGATGTACAGGAAAATCAGTAAAGGGGTATTCAAATTTCCTAAATGGTTTGCACCAGATGTTCGCCGGTTATTATCCAGAATATTGAATCCAAACCCAAAGGCCAGGATACCAATTGCCAGAATTATGAAATGTTCTTGGTTTAAAGTGGGGTTGGAGAATCCTGCTATGACTGCTGCAACCGAAAACCAAGAACCAGCTGCAGCTCCAGCTCCCGTGAATGCTGATGGAATACTTGAAGCGTGCGAGAATGACGGTCCACCTATTGCAGAGTCAAAGCATGAACTGACCAAGCCTGGTAACTTGAATGCTTTTGCTATTATCTCCTTCTCAACTGGTTTTGATTTATCTGGTATGTTTGAGGATAGTGTTCCAATGAAAGAGATGCGGTTCATGTCAAATAAGCCTGCTTCGAGTATAATCTCTAAGTTGGAAGAAATTTGTAAGAGGCTTTGCTTGAAAGTAAGGAAGAAAGATGGAGGCTTGTTGAAGTTGGAGGGTTGTAAGGAAGGCAGAAAAGGGAGTATAGGTGTTGATGCTGAGATTTTTGAGATTACGCCACAGCTCCACATGGTGGAACTTCGAAAGTCCAATGGTGATACCATGGAGTATCAGAAGCTTTTTACACAGGATATCAGACCAGCACTTGAAGACATTGTTTGGACATGGCAAGGAGAACAACCACAGCAAGAGCAACAGCATCATGAAGTTGTTCTGGAAGAGCAGCAACCTTAG 1389 0.4248 MEQKGGVLLQKYELGRLLGQGNFAKVYHGRNLITGMSVAIKAIDKEKILKVGLVDQIKREVAVMRLIRHRHVVELYEVMATKTKIFFVMEHAKGGELFNKVLKGRLKVDAARKYFQQLISAVDYCHSRGVCHRDLKPENILLDENDNLMVSDFGLSALTESKRQDGLLHTVCGTPAYVAPEVISRKGYDGMKADIWSCGVILFVLLAGHLPFHDSNLMEMYRKISKGVFKFPKWFAPDVRRLLSRILNPNPKARIPIARIMKCSWFKVGLENPAMTAATENQEPAAAPAPVNADGILEACENDGPPIAESKHELTKPGNLNAFAIISFSTGFDLSGMFEDSVPMKEMRFMSNKPASSIISKLEEICKRLCLKVRKKDGGLLKLEGCKEGRKGSIGVDAEIFEITPQLHMVELRKSNGDTMEYQKLFTQDIRPALEDIVWTWQGEQPQQEQQHHEVVLEEQQP 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00834 462 FunFam Non-specific serine/threonine protein kinase 6 301 - -
Vian2g00834 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vian2g00834 462 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 435 - -
Vian2g00834 462 ProSiteProfiles NAF domain profile. 315 339 IPR018451 GO:0007165
Vian2g00834 462 Pfam NAF domain 317 375 IPR004041 GO:0007165
Vian2g00834 462 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00834 462 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00834 462 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Vian2g00834 462 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00834 462 Gene3D Kinase associated domain 1, KA1 315 440 - -
Vian2g00834 462 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vian2g00834 462 Gene3D Transferase(Phosphotransferase) domain 1 3 303 - -
Vian2g00834 462 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Vian2g00834 462 FunFam Non-specific serine/threonine protein kinase 315 439 - -
Vian2g00834 462 CDD CIPK_C 321 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00834 Vian-Chr2 12497602 12498990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00834 1 447 CBL-interacting serine-threonine protein kinases AT5G58380 63.297 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vian2g00834 Pkinase 1.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00834 K07198 - gmx:100811923 725.702