Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00825 ATGGGTAACAACAGGTTCAAATTATCAGACATGATCCCCAATGCCTGGTTCTACAAACTCAAGGACATGGGAAAAGCAAGAAAGCAAACCCCATCTCAGTCCAAGAAGAAAAAACAACCTTCACCAGCCTCAAGCACACCACCATCAAAACCAAAACAACCCCACCAATTCAATCCCAGAAAGTCTTACTACTTCACAAGGGAGCTTAACCCAAATGATAGAATCTACACCTCACAAGCAAATAACCAAAATGCCAAATGCAACAATTCCCCTGAAGCCCCCAGAAAATCATCCAAACAAAGACTCAAGAGAAGAACTGCAAGGACTTCTTCACCTAAGTTTGCTGTAGCCGCTAACAATGACAACTCCTCATCACCACATGATAGCTCTGCCGAATCAGAGTACCCTGACCCAGAATTCAGAACAGACCGTGTTCTTGCCACTGAAGCATTTGATGAAACGGTTTCTTGGACCAACTCTTTCGCCTGCAAGGTACACTCCGACGCCAAGGACATCATCATTGAAGTAGACAACAATTCCACAGAAAGAAAAGACGATAAGCTAGAAGGGTATGAATATGATTCCTTCTCGGACCTCGTGCTTCCACCAATTGTGACCAAGCCTGCAAAATTCGATGACTTGCTGAGTGATGCCAAGAAGAAAGAAACCAAAACCAAAACCAAAATGGATGCACCAGAAGAACCAAACCTGAAGGGACCTCTAAGAGTTAAAATTGTGAAGGAAGGCACTGCGCCAATGAAGGAACATAAGAACACCCCTGGTAGGAGATTCTCTGTGAGCTCTTCTCCAGGGGTGAAGCTGCGGACGAACTCTCCGCGAATTGGCAGCCGGAAAACTCAGGCACATGGCCGGAGGAATGTGTCATCCACCGCTGGCTCCGGCTCCCGGAGAAGCCTTTCGGATAGCTTTGCAATTATGAAGTCATCACTGAATCCTCAGAGGGACTTCAGAGAATCAATGGTGGAGATGATTGTGCAGAACAACATAAGGACATCAAAGGATTTAGAGGATCTTCTTGCTTGCTATCTTTCTCTTAATTCAGATGAGTATCATGACCTCATTATCAAAGTGTTCAAGCAAATATGGTTTGATTTAACTGATAATTAG 1128 0.445 MGNNRFKLSDMIPNAWFYKLKDMGKARKQTPSQSKKKKQPSPASSTPPSKPKQPHQFNPRKSYYFTRELNPNDRIYTSQANNQNAKCNNSPEAPRKSSKQRLKRRTARTSSPKFAVAANNDNSSSPHDSSAESEYPDPEFRTDRVLATEAFDETVSWTNSFACKVHSDAKDIIIEVDNNSTERKDDKLEGYEYDSFSDLVLPPIVTKPAKFDDLLSDAKKKETKTKTKMDAPEEPNLKGPLRVKIVKEGTAPMKEHKNTPGRRFSVSSSPGVKLRTNSPRIGSRKTQAHGRRNVSSTAGSGSRRSLSDSFAIMKSSLNPQRDFRESMVEMIVQNNIRTSKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTDN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00825 375 NCBIfam uncharacterized plant-specific domain TIGR01568 311 373 IPR006458 -
Vian2g00825 375 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 41 373 IPR038933 GO:0045892
Vian2g00825 375 MobiDBLite consensus disorder prediction 251 306 - -
Vian2g00825 375 MobiDBLite consensus disorder prediction 81 139 - -
Vian2g00825 375 MobiDBLite consensus disorder prediction 81 95 - -
Vian2g00825 375 MobiDBLite consensus disorder prediction 22 66 - -
Vian2g00825 375 Pfam DNA-binding domain 1 41 IPR025830 GO:0003677
Vian2g00825 375 Pfam Transcriptional repressor, ovate 316 372 IPR006458 -
Vian2g00825 375 MobiDBLite consensus disorder prediction 262 306 - -
Vian2g00825 375 ProSiteProfiles OVATE domain profile. 312 371 IPR006458 -
Vian2g00825 375 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00825 Vian-Chr2 12333633 12334760 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vian2g00825 Ovate 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00825 - - gmx:100794572 541.576