Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00804 ATGGACAAGCTTGGCGGTTCTACTATTCGTATGAAAGCAATTGAGGAGCTTCTCAGAGGTCGTGATTCTGCCACACAGCTCAGGAGTGTCATCAATGGGAATGGTGAAGATTCTCCTTCAGCGGAGAAACTCGTGAAGGAGGTGCTCATGTCCTTCACCAACTCCCTCTTGCTCTTGAACGACAACCCCACTTCTGAATTTCACGATGCCTCCAATGTTCAACTTTGGGCCTCTCCCAAACTCGAGGACTCTCAAGAGAGCAATTGCAAGAACTCCACGGTTAAAGCACGAAGAGGGTGTTACAAGAGAAGGAACTACTTTAGGTGCACTCACAGAGACCAGGGTTGCCAAGCGACAAAGCAGGTGCAAAGAGTTCAGGAGGATCCAATCTTGTACAAGACAATCTACTACGGTGAGCACAGTTGCAAGAACATGGGAAACCCCGAGATCATACTCGACATGTCTCCTTCATCTTCTTCCAAGTTTCTTAGCTTCAACAACTCCTTCTCTACCCAATCACAACAAGAGTGTCCCTTTCTCTCATCATCTTTCCCTTCATCTGTCAAAAGGGAGTGCAAGGAGGAGATTCCACCCTCAACTTCCTCCAATGATTACCTCATCTCTTCTGACCTCACCTTTGATGGTTCACCAAAACATGTCACTCTATCATCTTCAACACCTGACTCAGAGTACAAGGCTGTCGACTTTCCAGATATCTTTGATGATGTCTTTGAAGGCTTGCTTGAATTTAGATAG 756 0.4616 MDKLGGSTIRMKAIEELLRGRDSATQLRSVINGNGEDSPSAEKLVKEVLMSFTNSLLLLNDNPTSEFHDASNVQLWASPKLEDSQESNCKNSTVKARRGCYKRRNYFRCTHRDQGCQATKQVQRVQEDPILYKTIYYGEHSCKNMGNPEIILDMSPSSSSKFLSFNNSFSTQSQQECPFLSSSFPSSVKRECKEEIPPSTSSNDYLISSDLTFDGSPKHVTLSSSTPDSEYKAVDFPDIFDDVFEGLLEFR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00804 251 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 104 167 IPR044810 GO:0003700
Vian2g00804 251 SUPERFAMILY WRKY DNA-binding domain 97 143 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian2g00804 251 SMART WRKY_cls 95 144 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian2g00804 251 Pfam WRKY DNA -binding domain 99 143 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian2g00804 251 ProSiteProfiles WRKY domain profile. 95 141 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian2g00804 251 Gene3D WRKY domain 83 144 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00804 Vian-Chr2 11878042 11879476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00804 10 142 WRKY Transcription Factor Family AT3G56400 29.143 1.32e-18 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian2g00804 WRKY 7.7e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00804 - - gmx:100805895 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00804 2 11878042 11879476 Vian2g00804 2 11878042 11879476 ECH