Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00800 ATGGTTTCCTCTCAGTTTTCGGGTTTTACGAAGGGTGGTTACAAACCCTCACAGACTAATTTACTCTTTCCTGCAAACCTGCCTGATACTGTGAACACGGAGCATATTGAGCTAGATTTCTCTGATGTATTCGGCCCAGTTACTGTAGATTTGAACAACATTGATTCCACTACTGGTGAACCTGTAGAAGACGTGAATGAGTTGGTTTATGATGACCCACCAGTCATTTACACCCGATCTCATTCTCTGGTTGGCCCTTCTGCTTGTGTTAGTCAATCACTTAAGCTTAGCAAACTCACCATACATGAGACTGAGGATTCACTGGAACTAGTGGATTATGCTGATGAAGAGACCTTTAAGGACATTAAAGAATCCTCCTTTGTCGAAGAGTCTTTGAAAGATGAAGACGGGAATATCTCAAAAACCCAAAGAGTTAGCATTGAAGATTTTGAGATTTTGAAGGTTGTGGGGCAGGGTGCATTTGCTAAAGTATATCAGGTGAGGAAGAAAGGTACTTCAGAAATATATGCTATGAAGGTTATGCGGAAGGACAAGATTATGGAGAAGAACCATACTGAATATATGAAAGCTGAGAGGGATATCTGGACAAAGATAGAACACCCTTTTGTTGTTCAACTCAGATACTCTTTTCAGACAAAATACAGACTGTATCTTGTGCTTGATTTTGTAAACGGGGGCCATCTCTTCTTCCAGCTTTATCACCAAGGCCTTTTCAGAGAGGATCTAGCACGCATATATGCTGCGGAGATTGTTTCTGCAGTTTCTCATCTCCATTCAAATGGAATAATGCACAGGGATCTGAAGCCTGAAAATATTCTACTGGACGCTGATGGCCATGTTATGTTGACTGATTTTGGCTTAGCAAAACAATTTGAAGAGAGTACTAGATCAAATTCGATGTGTGGTACATTAGAGTACATGGCACCTGAAATTATTCTTGGCAAAGGCCATGATAAGGCTGCTGATTGGTGGAGCGTAGGTGTTCTACTGTTTGAGATGCTTACTGGAAAGCCCCCTTTCTGTGGTGGTAGCCGTGACAAAATTCAGCAGAAGATAGTTAAAGACAAGATCAAGCTACCAGCATTTTTGTCAAGTGAAGCACATTCACTGTTGAAAGCGCTGCTACAGAAGGAAGCAACGAAGCGCTTAGGTTGTGGAGCCCGGGGAGTTCAGGAAATTAAGGGACACAAGTGGTTTAAACAAATCAATTGGAGAAAGCTGGAAGAACGAGAAATCCAGCCAAGCTTTATCCCAGACGTAGCTGGTACGCACTGTGTTGCCAACTTTGAGAAACGCTGGACTGATATGCCTGTTGTGGACTCGCCAGCTGCCAGCCCAAATGGTGGAAACCCCTTTAAGGACTTCTCTTACGTGAGGCCTGCACCTTCTTTTCTTCAGAGGAATAGCCCTGCGTACTAA 1440 0.4299 MVSSQFSGFTKGGYKPSQTNLLFPANLPDTVNTEHIELDFSDVFGPVTVDLNNIDSTTGEPVEDVNELVYDDPPVIYTRSHSLVGPSACVSQSLKLSKLTIHETEDSLELVDYADEETFKDIKESSFVEESLKDEDGNISKTQRVSIEDFEILKVVGQGAFAKVYQVRKKGTSEIYAMKVMRKDKIMEKNHTEYMKAERDIWTKIEHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARIYAAEIVSAVSHLHSNGIMHRDLKPENILLDADGHVMLTDFGLAKQFEESTRSNSMCGTLEYMAPEIILGKGHDKAADWWSVGVLLFEMLTGKPPFCGGSRDKIQQKIVKDKIKLPAFLSSEAHSLLKALLQKEATKRLGCGARGVQEIKGHKWFKQINWRKLEEREIQPSFIPDVAGTHCVANFEKRWTDMPVVDSPAASPNGGNPFKDFSYVRPAPSFLQRNSPAY 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00800 479 FunFam Non-specific serine/threonine protein kinase 147 253 - -
Vian2g00800 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Vian2g00800 479 CDD STKc_AGC 156 406 IPR045270 GO:0004674|GO:0005524
Vian2g00800 479 Gene3D Transferase(Phosphotransferase) domain 1 230 425 - -
Vian2g00800 479 SMART pkinase_C_6 407 466 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vian2g00800 479 PANTHER RIBOSOMAL PROTEIN S6 KINASE 115 468 - -
Vian2g00800 479 Pfam Protein kinase domain 150 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00800 479 ProSiteProfiles Protein kinase domain profile. 150 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00800 479 SUPERFAMILY Protein kinase-like (PK-like) 147 469 IPR011009 -
Vian2g00800 479 SMART serkin_6 150 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00800 479 FunFam Non-specific serine/threonine protein kinase 230 425 - -
Vian2g00800 479 Pfam Protein kinase C terminal domain 429 464 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vian2g00800 479 ProSitePatterns Protein kinases ATP-binding region signature. 156 179 IPR017441 GO:0005524
Vian2g00800 479 Gene3D Phosphorylase Kinase; domain 1 147 447 - -
Vian2g00800 479 ProSiteProfiles AGC-kinase C-terminal domain profile. 407 474 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00800 Vian-Chr2 11820174 11823931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00800 1 476 AGC Kinase Gene Family AT3G08720 67.500 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Vian2g00800 Pkinase 5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00800 K04688 - gmx:100804819 890.567