Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00799 ATGGCTTCTCTGCTTCCTACAACTACAACAACACTTCAACATAATCGTACCATCTGCTTCTCTCCTCTCAAACTCAGCATCCCAATTGCCATTTCCTTTCCGACAAACCGTTTCAAGAGTACCTCTGCAAAGTGTAATGCAGTTTTTGGTGATACTCCCAAAGACTTGTTGGAGACCACTTTTCACTTGGACCAGTTTTCTGTCTTCCAATCAGTGTTAGTAAAGTTTCAGCATGTAACTGAAGATTTATCAGACGTGCAGAGGTGGGGGTTTGTGATACTTGCAGGGCTGACATGGGCCTATTTAACTGCGAGGCCGGGTGTCCTTGTGGGCGCCATTGATGCATTCCTTTTGGCCCCTATTCAACTGGTTTTGGACAGTTTATCTGGAAGAAGAAATCTTAAGAGGACTGATTTTCTTATTGGAGATAAACTAGGAGAAGGGTCTTTTGGTGTTGTTTATTCAGGTGTTTTCGTCCCAAAGAATGTAGATGCACAGGAGTTGATGCAAAAAAATGGAAGAGGCAAGTTGAAAAAGTTGGATGCCAAATCTAAGGATAAAGTCATTCTTAAAAAGGTAAAGGTTGGAATTGAAGGGGCAGAGGAATTTGGTGATTTTGAGGAGTGGTTCAATTACAGACTCTCCAGAGCAGCTCCTGAAACATGTGCTAAGTTTCTTGGAAGTTTTGTAGCTGACAAAACGAATTCACAGTTCACAAAAGGTGGAAAATGGCTAGTTTGGAAGTTTGAGGGAGGGCGCTCTCTTGCCGATTACATGGCTGATCAAAGCTTCCCGTCAAACTTAGAGTCTACCATGTTTGGACGTGTCTTGCAGAGTGTAGACTCTTCTAAACGAAATGCATTAATCGTCAAGCAAATAATGCGCCAGATCATTACTTCTCTTATGAAAATTCACGACACTGGAATTGTTCATAGGGATGTTAAGCCTGCCAACTTGGTAGTTACCAAACGGGGGCAGATTAAACTCATCGATTTTGGTGCTGCAACAGACCTTAGAATTGGAAAGAATTATGTTCCCAATCGTAACCCCTTGGACCGTGACTACTGCCCGCCTGAACTGTCTGTTCTACCAGAAGAAACTCTGAGTCTTCCACCAGAGCCAATTGCAGCTTTCCTTTCACCAATCATGTGGCAGTTAAAGAGTCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTATTCCTGCAAATAGCAATTCCAACCTTAAGATCTTCAGTTGCTTTGAAGAATTTTAATTTGGAGATAAGAACTTGTGGATATGATTTGAACAAATGGAGAGCGTCTACTCGCATGAGGTCTGACTTCCAAATTCTTGATAGTGACTCTGGAAGAGGTTGGGACTTGGCAACAAAGCTTATCTCCAAGAGATGCTCACAATTAAGAGGACGTTTATCTGCTGCTGCTGCTTTGAGGCATCCTTATTTCCTTCTTGGTGGGGATCAGGCCGCTGCAGTCCTTTCAAAACTAAGCTTTTAA 1497 0.4248 MASLLPTTTTTLQHNRTICFSPLKLSIPIAISFPTNRFKSTSAKCNAVFGDTPKDLLETTFHLDQFSVFQSVLVKFQHVTEDLSDVQRWGFVILAGLTWAYLTARPGVLVGAIDAFLLAPIQLVLDSLSGRRNLKRTDFLIGDKLGEGSFGVVYSGVFVPKNVDAQELMQKNGRGKLKKLDAKSKDKVILKKVKVGIEGAEEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKTNSQFTKGGKWLVWKFEGGRSLADYMADQSFPSNLESTMFGRVLQSVDSSKRNALIVKQIMRQIITSLMKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNRNPLDRDYCPPELSVLPEETLSLPPEPIAAFLSPIMWQLKSPDLFDMYSAGIVFLQIAIPTLRSSVALKNFNLEIRTCGYDLNKWRASTRMRSDFQILDSDSGRGWDLATKLISKRCSQLRGRLSAAAALRHPYFLLGGDQAAAVLSKLSF 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00799 498 SUPERFAMILY Protein kinase-like (PK-like) 136 483 IPR011009 -
Vian2g00799 498 Gene3D Phosphorylase Kinase; domain 1 127 249 - -
Vian2g00799 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Vian2g00799 498 Gene3D Transferase(Phosphotransferase) domain 1 275 484 - -
Vian2g00799 498 ProSiteProfiles Protein kinase domain profile. 139 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00799 498 Pfam Protein kinase domain 289 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00799 498 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 44 497 - -
Vian2g00799 498 SMART serkin_6 139 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00799 Vian-Chr2 11816034 11818838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00799 139 338 MAP Kinase Kinase Kinase AT3G13530 24.500 6.24e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vian2g00799 Pkinase 1.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00799 - - gmx:100795624 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00799 2 11816034 11818838 Vian2g00799 2 11816034 11818838 ECH