Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00794 ATGCCGTTAAAGCTTGTCTTTGCTTCCTCTTGGCCCGAGTTCATGTTCTTTAAGCTTCGCATTGCTGCTGTTTGTGTGCTCAAAGGAAACAAGTGGACTGCTGAAACCAGGCAACCAGTTCCATTCCAGCCTCTCATCTCAGGCACCTTGATTCAACAAGTAAATTTGATGATGCTACAGTCCTACTTTTCAACAATTCCAATTTTCCTACTCCTGCTAGTGTTTCCTCAAACTAAAGCTGATCTACACTCAGAAAAGCAAGCTCTTCTTGATTTTGCTGCTGCACTTCATCATGGTCCAAGAGTCAATTGGAACTCTAGTACCTCAATCTGCACTTCATGGGTGGGAGTTACATGTAGTCATGATGGGTCCCATGTGCTTTCTGTGAGGCTTCCAGGTGTGGGACTGCGCGGTTCTGTCCCACCAAACACACTTGGTAAGCTTAATGGCCTCATTAGTCTCAGTCTTAGGTCCAACAGCTTGAGGGGGAACCTTCCAAGTGACCTACTTTCCCTTCCTTCTCTGCGCTTTGTATATCTCCAACACAACAACTTCTCAGGTCATATTCCTGATTCACTGCCACCCCGGCTTATCTTTCTTGATCTGTCCTATAACTCTTTCACAGGTCAAATTCCAGACTCAATCCAAAACTTGACACATCTAATAGGACTCAACCTCCAAAACAACTCTCTCTCAGGATCCATTCCTGATGTTAACCTCCCTACCCTTAAGATTTTGGATTTAAGCTTCAACTACTTGAATGGTTCTATTCCTTCATTTTTCCGTAAGTTTACTGGCTCCTCATTTAGAGGGAATATGATGTTATGTGGAGCACCTTTGAAACATTGTTCTTCAGATTCCACTTCTACCACATTGTCTCCATCAACAGTCTCTCAAAGACCAAGTGATCCATCAAACAGGAAAATGAACAAGGGGGCAAAAATAGCAATTATTTTGGGGGTTGTCACTTTGCTGTTTCTTCCAGGTCTTATGGTAGTGTTTTGCTGTTTCAAGAAAAAAGTTGGTGAACAAAATGTTGCACCTGCAGAGAAAGGTCAGAAGCTTAAGGAGGACTTTGGTAGTGGTGTGCAAGAACCTGAGAGAAACAAGCTTGTATTCTTTGAAGGTTGTTCTTATAATTTTGATCTGGAGGACTTGTTAAGAGCTTCAGCTGAAGTGCTTGGGAAGGGAAGTTGCGGAACGACATATAAAGCCATCTTGGAGGATGGAACAACAGTGGTTGTGAAGAGGTTAAAAGAGGTGGCAATGGGGAAAAAAGAATTTGAACAGCAAATGGAGATTGTTCAAAGACTTGATCATCACCCAAATGTGATTCCCCTCCGTGCTTACTACTACTCCAAAGATGAAAAATTAATGGTTTACGACTACTGCACAGCCGGAAGTTTTTCCAAGTTACTGCATGGAACCAGGGAAACTGGACGAGCTCCACTAGATTGGGATTCAAGATTGAAGATTGTGGTTGGAGCTGCAAGGGGTGTTTGTCATATTCACTTAGCCAATGGAAGGAAACTTGTCCATGGCAATATAAAATCATCTAATGTGATTCTCACAATAGATCTCCAGGGCTGTATATCAGATTTTGGCCTAACTCCCCTGACAAATTTCTGTGCCTCCTCTAGAAGTCCAGGCTATGGAGCACCTGAAGTTATTGAACAAAGAAAGTCCACCCAAAAATCTGATGTGTACAGCTTTGGTGTTCTCCTTCTTGAGATGCTGACTGGCAAAACACCAGTTCAGTATTCAGGGCATGATGAAGAGGTTGATCTTCCAAAGTGGGTCCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGTTAATGAGGTATCCAAACATTGAAGATGAACTTGTGCAGATGCTGCAACTGGCAATGGCATGTGTAGCAGTGATGCCTGACTCAAGACCCTCAATGGTGGAAGTTGTTAGAACAATAGAAGAAATTAGAGCTTGCATTTATTAA 1992 0.4262 MPLKLVFASSWPEFMFFKLRIAAVCVLKGNKWTAETRQPVPFQPLISGTLIQQVNLMMLQSYFSTIPIFLLLLVFPQTKADLHSEKQALLDFAAALHHGPRVNWNSSTSICTSWVGVTCSHDGSHVLSVRLPGVGLRGSVPPNTLGKLNGLISLSLRSNSLRGNLPSDLLSLPSLRFVYLQHNNFSGHIPDSLPPRLIFLDLSYNSFTGQIPDSIQNLTHLIGLNLQNNSLSGSIPDVNLPTLKILDLSFNYLNGSIPSFFRKFTGSSFRGNMMLCGAPLKHCSSDSTSTTLSPSTVSQRPSDPSNRKMNKGAKIAIILGVVTLLFLPGLMVVFCCFKKKVGEQNVAPAEKGQKLKEDFGSGVQEPERNKLVFFEGCSYNFDLEDLLRASAEVLGKGSCGTTYKAILEDGTTVVVKRLKEVAMGKKEFEQQMEIVQRLDHHPNVIPLRAYYYSKDEKLMVYDYCTAGSFSKLLHGTRETGRAPLDWDSRLKIVVGAARGVCHIHLANGRKLVHGNIKSSNVILTIDLQGCISDFGLTPLTNFCASSRSPGYGAPEVIEQRKSTQKSDVYSFGVLLLEMLTGKTPVQYSGHDEEVDLPKWVQSVVREEWTAEVFDLELMRYPNIEDELVQMLQLAMACVAVMPDSRPSMVEVVRTIEEIRACIY 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00794 663 FunFam pollen receptor-like kinase 1 356 463 - -
Vian2g00794 663 Pfam Protein kinase domain 391 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00794 663 Pfam Leucine rich repeat N-terminal domain 84 120 IPR013210 -
Vian2g00794 663 SUPERFAMILY Protein kinase-like (PK-like) 392 655 IPR011009 -
Vian2g00794 663 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 464 661 - -
Vian2g00794 663 Gene3D Ribonuclease Inhibitor 83 193 IPR032675 -
Vian2g00794 663 Gene3D Phosphorylase Kinase; domain 1 355 463 - -
Vian2g00794 663 Gene3D Ribonuclease Inhibitor 194 285 IPR032675 -
Vian2g00794 663 SUPERFAMILY L domain-like 100 281 - -
Vian2g00794 663 PANTHER OS05G0588300 PROTEIN 68 659 - -
Vian2g00794 663 ProSiteProfiles Protein kinase domain profile. 388 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00794 663 FunFam Leucine-rich repeat receptor-like protein kinase 84 194 - -
Vian2g00794 663 MobiDBLite consensus disorder prediction 286 308 - -
Vian2g00794 663 Gene3D Transferase(Phosphotransferase) domain 1 465 661 - -
Vian2g00794 663 MobiDBLite consensus disorder prediction 286 306 - -
Vian2g00794 663 FunFam Leucine-rich repeat receptor-like protein kinase 195 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00794 Vian-Chr2 11671674 11674492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00794 80 659 Receptor kinase-like Gene Family AT5G58300 61.290 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian2g00794 Pkinase 6.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00794 - - var:108321341 1271.14