Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00788 ATGTTTGTATTATATATAACTGATTCCTTAAGCTTAGAACGCTATCAGTTATCAATATCTGCTTGGGAAGATGGAAACCGTATAACCATGTATTTAAAACTGTTCCCTTCATATGATTCCTACTTAAATATGTTCAACGAAAGTGAGGTCTCTCGTATTAAAACCACATTTACATCATGGGGATTTCCTCCCAATCATTTCTTTGGACCATATGAACTCCTGAGCTTCACTCTTGTTGGACCTTATGCAACTACTACTGATTCAAAGAGGGGTGGATCTAATTCACTCATATTGGGTGCTGCTTTAATATCAGCTGTTGCTAGTATTTTAGCAACATCTGCTCTAATCATTTTCCTGCTTTTTAGAAGACGTGCAAAATATCAGCACATGAATTCAAGGAAACATAAGTCCCCTAGTGTACACATTAAAATAGACAGTGTTAAAGAATTTAGTTTCATAGAACTGGCTATTGCTACGAAAAATTTTAGCAGCTCAACTATAATTGGCAAAGGAGGTTATGGAGATGTCCATAAAGGCATTTTGTCTGGGGAAACACTTGTGGCCATTAAACGAGCAGCAGAAGATTCCTTACAAAGCCAAAAGGAGTTTTTGACTGAGATTGAACTTTTATCGAGGTTACACCACCGAAATCTTGTCTCACTGATTGGATACTGTAATGAAGAAGAGGAGCAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATTTCTGGTAGAACTGAAAAAGCCAAGGAAAGACAAAATTTTGGTATGGGGTTAAAAATTGCATTGGGTGCAGCCAAAGGCGTACTTTATCTTCATACAGAAGCTAACCCTCCTATATTCCACCGAGATATTAAAGCCAGCAACATACTTTTAGACTCCAAATTTACAGCTAAAGTAGCTGATTTTGGACTTTCACGGCTTGCATCAGAAGGATCTGGCACTAAATACCTGTCAACTGTTGTGAAGGGAACACCAGGTTACCTTGACCCAGAATATGTATTGACTCATAAGTTTACTGACAAAAATGATATCTATAGCCTAGGAGTTGTGTTTCTGGAGCTTTTGACCGGCATGCAGCCAATCTCACGTGGCAAACACATCATTAACGAGGTTAATGCGGCTTGTCGATCTGGCATGATATATTCCGTTATAGGGAAAAGAATGGGGTTGTATCCATCAGATTGCTTGGACAAGTTTTTAACTCTGGCCCTCAGATGTTGCAAAGATAAACCAGAGGAGAGGCCATCAATTCTAGACGTGGTGAGGGAACTAGAAGATATTGCTGCAGTGCTATCACAAAGTGATGAAGCCAGATTCCCAGAACCCATAGATAATTCAGGTGAAATGGCACTCTTATCATCTTCAGGATCTAATGCAGCAAGAGAGGATCAACACAAGTACGCGTATGTGTCAGGAAGTAATCTTGTCAGTGGTGTCATTCCCACCATTGTTCCTCGCTAA 1479 0.3989 MFVLYITDSLSLERYQLSISAWEDGNRITMYLKLFPSYDSYLNMFNESEVSRIKTTFTSWGFPPNHFFGPYELLSFTLVGPYATTTDSKRGGSNSLILGAALISAVASILATSALIIFLLFRRRAKYQHMNSRKHKSPSVHIKIDSVKEFSFIELAIATKNFSSSTIIGKGGYGDVHKGILSGETLVAIKRAAEDSLQSQKEFLTEIELLSRLHHRNLVSLIGYCNEEEEQMLVYEFMPNGTLRDWISGRTEKAKERQNFGMGLKIALGAAKGVLYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLASEGSGTKYLSTVVKGTPGYLDPEYVLTHKFTDKNDIYSLGVVFLELLTGMQPISRGKHIINEVNAACRSGMIYSVIGKRMGLYPSDCLDKFLTLALRCCKDKPEERPSILDVVRELEDIAAVLSQSDEARFPEPIDNSGEMALLSSSGSNAAREDQHKYAYVSGSNLVSGVIPTIVPR 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00788 492 ProSiteProfiles Protein kinase domain profile. 162 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00788 492 ProSitePatterns Protein kinases ATP-binding region signature. 168 190 IPR017441 GO:0005524
Vian2g00788 492 SUPERFAMILY Protein kinase-like (PK-like) 137 433 IPR011009 -
Vian2g00788 492 FunFam Leucine-rich repeat protein kinase family protein 125 237 - -
Vian2g00788 492 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 238 445 - -
Vian2g00788 492 Pfam Protein kinase domain 164 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00788 492 SMART serkin_6 162 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00788 492 Gene3D Transferase(Phosphotransferase) domain 1 238 447 - -
Vian2g00788 492 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 69 463 - -
Vian2g00788 492 Gene3D Phosphorylase Kinase; domain 1 131 237 - -
Vian2g00788 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00788 Vian-Chr2 11530261 11533747 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00788 2 433 Receptor kinase-like Gene Family AT5G01950 58.636 3.98e-161 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vian2g00788 Pkinase 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00788 - - vum:124833501 915.99