LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian2g00786	ATGCTCCAATTTCAATACCCCCTTTATTCATCATCCCTTCCATTTGGTTGCTTTTCAGGATATACTGTGATGCCGGCTCTGAGAATTCATGGATATGCCTTGGCTCTTTCGTTTTGTCTTATCACCTTCATAGCAGCATCACGACGAACAGACCCTTCAGAAGTTAATGCGCTGATAGACATCAAGAAAAGTTTGATTGATCCTAAGAACAATCTTAAGAACTGGAATAAAGGAGACCCATGTGCAAGAAACTGGACTGGGGTATGGTGTTTTGATAAGACGGGGGATGATGGGTATTTCCATATTCGTGAGATCTACTTAATGACAATGAATCTCTCGGGAAGTCTATCATCTCAGCTTGGTCAGCTATCCCATCTTGAGATAATGGATTTCATGTGGAACAATCTGACAGGCACGATACCAAAGGAGATTGGAAACATTAAAACATTGAAACTCTTGCTCTTGAATGGCAATATGTTATCTGGGAGTTTACCAGACGAGCTTGGCAACCTTCCAAATTTAAATAGATTCCAAGTAGACGAAAACCAATTGTCTGGTTCTATACCAGATTCACTTGCCAACATGACTAGTGTTAAACACCTTCACCTGAACAACAACTCTTTTAGTGGTCAACTTCCATCTACACTTTCAAAGTTATCAAATCTGATGCATTTGCTTGTGGACAACAATAACTTATCTGGAAATCTTCCACCAGAATACTCCATGTTAAATGGATTGGCAATACTCCAGCTTGATAACAACAACTTTAGCGGGAATGGAATTCCTTCTACCTATGCAAACTTAACCAGGCTAGTGAAATTAAGTCTAAGAAACTGCAGTCTGCGAGGAGCTATTCCTGATTTCAGTTCAATACCCAAGCTTACCTATTTAGATCTTAGCTGGAATCAATTCACTGGACCCTTACCATCAAATAAGCTGGCAGACAATATGACAACTATTGATCTGTCCAATAATCTTCTGAACGGATCTATTCCTCGAAGCTACTCTTATCCTCATCTTCAAAAATTGTCACTTGCGAATAATTTACTGTCGGGTTCCATCCCTGCTAGCATATGGCAGAATATGTCCTTCAGTGTGAAAGATAAACTTATGATTGATCTCCATAACAACTCATTTGAGGATGTTTCGGGAAATCTGAACCCCCCGGCAAATGTTACCTTGAGGCTTTCTGGTAATCCTATATGCAAGAACTCCAACGCACAAAGTGCTAGTAAATATTGTGGACCTGAAGAAGATAAGGCAGTTCAAGACTTAACAAGCTCTACCGTTTGTCATGTTCAATCTTGTCCATTTGATGACTTTTATGAATACGCCCCTAATTCCCCAGTTCCTTGCTATTGTGCTGCACCTCTGAGAATTGGATACAGGCTGAAAAGTCCAAGTTTTTCTTACTTTGCTCCCTATAGATCTAGTTTTGAACACTACATAACTGACTCCCTAAAACTACACCTCTACCAACTATCAGTAGATTCTGTAGCTTGGGAAGAGGGACCTCGTCTTAGAATGTATTTGAAACTCTTCCCTTCCTATAATGATTCCCGTTCTAATGTGTTCAATGTAAGTGAGGTTCGTCGGATTAGCCGCCTATTCTCATCATGGCGATTTCCTCGCACTGATTTTTTTGGACCATATGAACTCCTGAACTTCACTCTTCTTGGACCTTATGAAAATTTAATTATTGATTCGGAGAAGGGAAAAGTTAATGTTGGCATAAAAGTTGCTGTTGTAATAGCAGCTGCTGCCTGTGCTTTAGCAATATCTGCAATAATCATTCTCCTGATTACTAGAAGAAAGATGAAATACCAGAAGAAGATTTCCAGGAAATCTACTACTAATATATCCCTCAAAATAGATGGCATGAAAGCATTTACTTACAAAGAACTGGCTCTTGCTACTAACAAATTCAATATCTCAACTAAAGTCGGTCAAGGAGGTTATGGGAATGTCTATAAAGGCATTTTATCTGATGAAAATTTTGTGGCGGTTAAGAGAGCAGAAGAAGGTTCCTTACAAGGACAAAGGGAGTTCTTGACAGAGATTGAGCTTCTGTCAAGGTTACACCATCGAAATCTTGTCTCACTGATTGGATACTGTAATGAAGAAGGGGAACAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATTTCTGGAAGAAGTAGAAAAACGAAGGGGAGCCTAAATTTTAGTACGAGGTTGAGAATTGCAATGGGAGCAGCCAAAGGCATACTGTATCTTCATACAGAGGCTAACCCTCCTATATTCCACAGAGATATTAAAGCCAGTAACATTCTTCTGGACTCCAAGTTTACAGCTAAAGTGGCCGATTTTGGACTCTCACGGCTTGTACCAGACTTAGATGAAGAGGGAACTGCTCCTAAATATGTGTCAACAGTTGTGAGAGGAACTCCAGGTTACCTGGACCCAGAATATTTGTTGACTCATAAGCTGACAGACAAATGTGATGTCTATAGCCTGGGAATTGTGTATCTAGAGCTTTTAACAGCCATGCAACCAATTTCTCATGGAAAAAACATTGTTCGCGAGGTTAACATGGCTCATCAATCTGGCACAGTATCTTCCATCATAGACAGCAGAATTGGGTTGTATACATCTGAATGCTTGGAAAAATTCTTAACTCTGGCCCTCAGTTGTTGCCAAGACAATCCAGAGGAGAGACCATCAATGATAGATGTGGTGAGGACACTGGAAGATATCATTGCAATGTTGCCTGAAGCTGAAACTGTTTACTCAGATGTTAGCTTAGACAGTTCTGGCAACATAGCACCACCCTCATCATCAGCATCAACATCAGCATCCCATGTAGCAAGGGAGGAGCAACACATGTCCTCATATGTGTCTGGAAGCAATCTTGTCAGTGATGTCATTCCCACCATTGTTCCTCGCTGA	2943	0.4057	MLQFQYPLYSSSLPFGCFSGYTVMPALRIHGYALALSFCLITFIAASRRTDPSEVNALIDIKKSLIDPKNNLKNWNKGDPCARNWTGVWCFDKTGDDGYFHIREIYLMTMNLSGSLSSQLGQLSHLEIMDFMWNNLTGTIPKEIGNIKTLKLLLLNGNMLSGSLPDELGNLPNLNRFQVDENQLSGSIPDSLANMTSVKHLHLNNNSFSGQLPSTLSKLSNLMHLLVDNNNLSGNLPPEYSMLNGLAILQLDNNNFSGNGIPSTYANLTRLVKLSLRNCSLRGAIPDFSSIPKLTYLDLSWNQFTGPLPSNKLADNMTTIDLSNNLLNGSIPRSYSYPHLQKLSLANNLLSGSIPASIWQNMSFSVKDKLMIDLHNNSFEDVSGNLNPPANVTLRLSGNPICKNSNAQSASKYCGPEEDKAVQDLTSSTVCHVQSCPFDDFYEYAPNSPVPCYCAAPLRIGYRLKSPSFSYFAPYRSSFEHYITDSLKLHLYQLSVDSVAWEEGPRLRMYLKLFPSYNDSRSNVFNVSEVRRISRLFSSWRFPRTDFFGPYELLNFTLLGPYENLIIDSEKGKVNVGIKVAVVIAAAACALAISAIIILLITRRKMKYQKKISRKSTTNISLKIDGMKAFTYKELALATNKFNISTKVGQGGYGNVYKGILSDENFVAVKRAEEGSLQGQREFLTEIELLSRLHHRNLVSLIGYCNEEGEQMLVYEFMPNGTLRDWISGRSRKTKGSLNFSTRLRIAMGAAKGILYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLVPDLDEEGTAPKYVSTVVRGTPGYLDPEYLLTHKLTDKCDVYSLGIVYLELLTAMQPISHGKNIVREVNMAHQSGTVSSIIDSRIGLYTSECLEKFLTLALSCCQDNPEERPSMIDVVRTLEDIIAMLPEAETVYSDVSLDSSGNIAPPSSSASTSASHVAREEQHMSSYVSGSNLVSDVIPTIVPR	980

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian2g00786	980	CDD	STKc_IRAK	648	917	-	-
	Vian2g00786	980	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	52	213	-	-
	Vian2g00786	980	Pfam	Leucine rich repeat N-terminal domain	52	90	IPR013210	-
	Vian2g00786	980	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	765	777	IPR008271	GO:0004672\|GO:0006468
	Vian2g00786	980	Pfam	Protein kinase domain	643	911	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian2g00786	980	Gene3D	Ribonuclease Inhibitor	316	402	IPR032675	-
	Vian2g00786	980	Gene3D	Transferase(Phosphotransferase) domain 1	718	930	-	-
	Vian2g00786	980	SUPERFAMILY	L domain-like	67	407	-	-
	Vian2g00786	980	ProSiteProfiles	Protein kinase domain profile.	642	918	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian2g00786	980	ProSitePatterns	Protein kinases ATP-binding region signature.	648	670	IPR017441	GO:0005524
	Vian2g00786	980	PANTHER	RECEPTOR-LIKE PROTEIN 55	61	917	-	-
	Vian2g00786	980	Gene3D	Phosphorylase Kinase; domain 1	602	717	-	-
	Vian2g00786	980	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	718	930	-	-
	Vian2g00786	980	SUPERFAMILY	Protein kinase-like (PK-like)	627	942	IPR011009	-
	Vian2g00786	980	SMART	serkin_6	642	919	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian2g00786	980	Gene3D	Ribonuclease Inhibitor	213	315	IPR032675	-
	Vian2g00786	980	Gene3D	Ribonuclease Inhibitor	51	212	IPR032675	-
	Vian2g00786	980	FunFam	Leucine-rich repeat protein kinase family protein	605	717	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian2g00786	Vian-Chr2	11482939	11490804	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian2g00786	28	926	Receptor kinase-like Gene Family	AT5G01950	59.890	0.0	1083

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Vian2g00786		Pkinase	1.1e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian2g00786	-		-	gmx:100815005	1596.25