Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00780 ATGGAACCCAACAACGCAGACGCTTTCCGACCTTCTTCTTCACCCTCATCTTCCCCCAGCTCCAGGAGAATTTCCGGGATTTTGTCGCCCACAAATATCATTCAGGCTCCGTTATCGGCGCTATTGGAATATTCCGGCATCCTTCCGTCGCGCTCGTCTAACCACCACAGCCACCCAGCCCCTGACGCAGTTAACAATGACGGCGAGGTTTCGATTAGGATCATCGGTCCCGCGGAGCAGGAGCAGCAACCCCGGGAGGAACAGCATAGCCCTTCTGTCGCTTCGGGATTGGTCGTGGGACTCGCGCATTCGCAAAACGATTCCGTGTTGCCCTCGTCGTCGCCGCGCAGCGATGGTGCTGAGGAAAGCACTGGCCCTGGAGGGGACGGCGTTGGGAGAGACTCTTCTTACCAGAGATACGACATTCAGCATGCTGCCAGGTGGATTGAGCAGGTCTTGCCGTTTTCGTTGCTTCTCTTGGTTGTTTTCATAAGGCAGCATTTGCAAGGGTTTTTCGTGACAATTTGGATTGCGGCTGTGCTTTTCAAGTCGAATGATATTATGAGGAAACAGACTGCGTTGAAGGGAGAGAGGAAAATACCGGTTTTGATTGGGATTTCTGTTGGGTTCGCGCTTCATGTGGTTGGTGTTTATTGGTGGTATCAGAATGATGATCTCATGTATCCCTTGATCATGCTTCCTCCCAAGGAAATACCGCCTTTCTGGCATGCCATTTTCATCATCATGGTCAATGGTGTGTTTCTCGTCCTCTCCTCAACGATTGCTTGCTATACTTTGGTCCGCCAAGCTGCAATGGTAGTCAAGTGTATGTTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTATCGTAAGCAGGGTCAAATGCTGACTTTAGTTGAATATCTCCTTCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCGTCACTGATGACAGGATTGTATCTAACATTTAAACTCACGTCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCAATAAAGGCATTGTCACGTAAAGAAATGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCCGGTGATCTATGTGCTATTTGTCAGGAGAAGATGCATGCCCCAATCTTACTACGTTGTAAACATATTTTCTGTGAAGACTGCGTATCGGAGTGGTTTGAGAGAGAAAGGACCTGTCCATTGTGTAGGGCTTTGGTAAAACCTGCAGACCTTAGGTCATTTGGAGATGGCTCTACTAGCTTGTTTTTCCAGTTATTCTGA 1332 0.479 MEPNNADAFRPSSSPSSSPSSRRISGILSPTNIIQAPLSALLEYSGILPSRSSNHHSHPAPDAVNNDGEVSIRIIGPAEQEQQPREEQHSPSVASGLVVGLAHSQNDSVLPSSSPRSDGAEESTGPGGDGVGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDIMRKQTALKGERKIPVLIGISVGFALHVVGVYWWYQNDDLMYPLIMLPPKEIPPFWHAIFIIMVNGVFLVLSSTIACYTLVRQAAMVVKCMLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAIKALSRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00780 443 MobiDBLite consensus disorder prediction 106 135 - -
Vian2g00780 443 CDD RING-HC_RNFT1-like 380 420 - -
Vian2g00780 443 ProSitePatterns Zinc finger RING-type signature. 397 406 IPR017907 -
Vian2g00780 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 356 430 IPR013083 -
Vian2g00780 443 MobiDBLite consensus disorder prediction 7 28 - -
Vian2g00780 443 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 16 443 IPR044235 GO:0061630|GO:1904294
Vian2g00780 443 SMART ring_2 382 419 IPR001841 -
Vian2g00780 443 SUPERFAMILY RING/U-box 374 425 - -
Vian2g00780 443 ProSiteProfiles Zinc finger RING-type profile. 382 420 IPR001841 -
Vian2g00780 443 MobiDBLite consensus disorder prediction 1 28 - -
Vian2g00780 443 Pfam Zinc finger, C3HC4 type (RING finger) 380 423 - -
Vian2g00780 443 MobiDBLite consensus disorder prediction 106 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00780 Vian-Chr2 11383560 11386854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00780 11 443 C3H Transcription Factor Family AT5G01960 69.866 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00780 - K22379 gmx:100818546 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00780 2 11383560 11386854 Vian2g00780 2 11383560 11386854 ECH