Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00778 ATGGCTGCGAATTCTGGGAACATGTCATTTGCATCGTCTCAATCTGGTTCACAGGCCCATGGGGATACTGATTCTGTTCACGTTGCAGTGTGTTCCCTTTGTGATAAGGCCCTATCACATGATAATAAGATGGCAAGCGATCTTGCTAGCCATGGTGTGTGCGGCGATTGTAAATTTTTGTTACTTGAAGACTTTGGGAATCATACATTTACCCAAAGTTCACGAAGGAGGCTTAGAGGAAGATTCAGGCGCAACAGTTCTGAATCCGTGGATAATAGTTTCTCACAGCAGATCCCTCATGTGCATAGTATGGTGAGACAATATGAATCACTTACCTCTGGAGAGGATGATCAACTTGTGGATGGTGACACCCCTGCTTGGTCAATGCAATATGTTAGTACACACACTACCCCAAGTGGGTCTAGAAGGTGGAGGCATGTTCTGTCTGACACTGACAGTGATGGTTTTGATAATTGGACTTCTCTTTATGGTGAAAATGAATCAAGTGTGAGTTTTAGACGGTACAGGGTTCCCCATGATGATGAGATAGAGTCTTTCTCTGCTTATGGAGGCGACTCAGATATTTCTATGGATACTCATAGTTTTGTAGGCACTGGACTCTTTAATTTACCAGATGAGGGAGATGAGGGAGATGAGTTCGATAGTGACACTGACATTGATCCAATGCATGCTGGCCATGGCCAATGGATTTCAGATGAAGATGATGAAGAAGAGGATGCAGATGGGGAGGTGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAATGATGATGATTATGATGAAGAGGAGGAGGATAGGGAATGGGAATTAGCTGAGGCTGAGGAAGCTGAAGCCACAGCCCGCCTTCAAATTTTTTTCACCTCAAGTCCAAGTGAGAGCGCAGATCGCAACAATTGGGAACAGAGGTTTAATTCTACTGAATCTGAGGGAATGTTTAGCCATATAATCAGGGATACTTGGCAAGCTTTTGAGGATGTTGATTTACCTCATGGAGCAAACTTTGGGGATTATCTTGATGCTAGACGTTTCGAAGATCTACTTGAGCATCTTGCTGAGAATGACAACTCAAGACGAGGAGCACCTCCCGCGGCCGTGTCTTTCACGAAAAATCTGCCACGTGTAGTCATTGGCAAAGAACATGAGAAGCATGATGAACTAGTTTGTGCCATTTGCAAGGATGTCCTGGCACCTGGCACTGAAGTAAATCAACTTCCTTGTTCTCACCTTTATCACATTGATTGCATTTTGCCATGGTTGAGTGCACGGAATTCATGCCCTCTTTGTCGTTATGAGCTTCCAACCGATGATAAGGATTATGAAGAAGGAAAGCAGAACATTGATGGTAGAAATGTGATCCATGAGAGGCAGCAAATGGATGTAATAGATGATAGTTCCTCTGATGTTTCTGATGGAGATGAGTTGAATGAAGAGAATGGTAGTAGTCAAGATGTTAGCTCAGGTTCTACAGCAATTTCTTCTACAAGAAGAAGTGGTAGAGGAAGATGGCTTTTTCTTGCTGCAGCTCCAATTGTTAGTTTAGTGGGCATTGTTCTTGTATTGTGGTTAGGCAATAACTCTGAAATTGAGGGAAATAGACATCTGGGCAGTCATTACTTATCCAGGCAAAATCAACATGCTTATGCATCTCCAAACCAGAGGGATAGTAGAAGCAGAAGATGGTGGTGCCCATTTTAA 1731 0.4321 MAANSGNMSFASSQSGSQAHGDTDSVHVAVCSLCDKALSHDNKMASDLASHGVCGDCKFLLLEDFGNHTFTQSSRRRLRGRFRRNSSESVDNSFSQQIPHVHSMVRQYESLTSGEDDQLVDGDTPAWSMQYVSTHTTPSGSRRWRHVLSDTDSDGFDNWTSLYGENESSVSFRRYRVPHDDEIESFSAYGGDSDISMDTHSFVGTGLFNLPDEGDEGDEFDSDTDIDPMHAGHGQWISDEDDEEEDADGEVEEEEEEEEEEEEEEENDDDYDEEEEDREWELAEAEEAEATARLQIFFTSSPSESADRNNWEQRFNSTESEGMFSHIIRDTWQAFEDVDLPHGANFGDYLDARRFEDLLEHLAENDNSRRGAPPAAVSFTKNLPRVVIGKEHEKHDELVCAICKDVLAPGTEVNQLPCSHLYHIDCILPWLSARNSCPLCRYELPTDDKDYEEGKQNIDGRNVIHERQQMDVIDDSSSDVSDGDELNEENGSSQDVSSGSTAISSTRRSGRGRWLFLAAAPIVSLVGIVLVLWLGNNSEIEGNRHLGSHYLSRQNQHAYASPNQRDSRSRRWWCPF 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00778 576 Coils Coil 237 291 - -
Vian2g00778 576 CDD RING-H2_PA-TM-RING 399 441 - -
Vian2g00778 576 ProSiteProfiles Zinc finger RING-type profile. 400 441 IPR001841 -
Vian2g00778 576 MobiDBLite consensus disorder prediction 1 21 - -
Vian2g00778 576 Pfam Ring finger domain 400 441 IPR001841 -
Vian2g00778 576 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 255 445 - -
Vian2g00778 576 SMART ring_2 400 440 IPR001841 -
Vian2g00778 576 FunFam E3 ubiquitin-protein ligase RING1-like isoform A 360 447 - -
Vian2g00778 576 MobiDBLite consensus disorder prediction 468 506 - -
Vian2g00778 576 MobiDBLite consensus disorder prediction 490 506 - -
Vian2g00778 576 MobiDBLite consensus disorder prediction 206 283 - -
Vian2g00778 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 360 447 IPR013083 -
Vian2g00778 576 MobiDBLite consensus disorder prediction 238 283 - -
Vian2g00778 576 SUPERFAMILY RING/U-box 390 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00778 Vian-Chr2 11351965 11353695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00778 13 576 C3H Transcription Factor Family AT5G01980 42.078 4.11e-113 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00778 - - pvu:PHAVU_008G078700g 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00778 2 11351965 11353695 Vian2g00778 2 11351965 11353695 ECH