Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00750 ATGGAAGGAAGAGAAGGGATGAGTTCTGGGGTTACAGTGATAGGAGCAGAAGCTCCATCAGCCTATCACATGGCACCAAGGAGTGAAGCTCCAAGTCAGGGTGGTCCTCCGGTGCCTGAAGCACCAGCTGCAGCTATTGGTGTGTCACCAGTGAGTGTGGCATTTGATGGAACATCAGTTAAGAAGAAAAGGGGCAGACCAAGAAAATATGGACCAGATGGGTTGGTGAATATGGCATTGTCACCAATGCCAATCTCATCTTCAGCACCATTTTCTAATAACTTTTCATCTGGGAAGCGGGGGAGACCAAAGGGGATGGATTACAAGCTGCCAAAGAAAGTTGGAGTGCATTATCTTGGTGGCTCTGATGGTACAAGCTTTATGCCCCATATCATTACTGTCAATAGTGGCGAGGACATAGCAATGAAGGTCATATCTTTTTCTCAACAAGGACCGCGTGCTATATGCATCTTATCTGCTAGTGGTGTAATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGAACTTTGACCTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGAAAACCAAGGAACAAGAAGCAGGTCTGGAGGAATGAGTGTTTCATTGTCAAGTCCAGATGGTCGTGTTGTAGGTGGTGGAGTGGCTGGTCTACTTGTAGCAGCAGGTCCTGTGCAGGTGGTGGTGGGAAGTTTTTTGCCATGCAGCCAGCAAGATCTGAAGCCAAAGAAGCCAAAGTCTGATTATGCACCTGCTACTGTTACCCCTTCCATTGCAGTGTCTTCTGGACCACCACCCTCTACCAATGGTGGTGAAAAGGAGGTTGTCATGGGTGGACACATACTGCACAACTCAGGAGCAACGCTTAACACAAACCTATCTCCTCCTCCCTCGGCCTTTCGCCGGGAAAACTGGGTGAACATGCACTCGATGACAGATTCAATGAAGTCAGCCACTGATATCAACATATCCTTGCCTGATAGTTAA 1017 0.4749 MEGREGMSSGVTVIGAEAPSAYHMAPRSEAPSQGGPPVPEAPAAAIGVSPVSVAFDGTSVKKKRGRPRKYGPDGLVNMALSPMPISSSAPFSNNFSSGKRGRPKGMDYKLPKKVGVHYLGGSDGTSFMPHIITVNSGEDIAMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLSSPDGRVVGGGVAGLLVAAGPVQVVVGSFLPCSQQDLKPKKPKSDYAPATVTPSIAVSSGPPPSTNGGEKEVVMGGHILHNSGATLNTNLSPPPSAFRRENWVNMHSMTDSMKSATDINISLPDS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00750 338 FunFam AT-hook motif nuclear-localized protein 1-like 129 259 - -
Vian2g00750 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 126 247 - -
Vian2g00750 338 MobiDBLite consensus disorder prediction 250 280 - -
Vian2g00750 338 MobiDBLite consensus disorder prediction 1 43 - -
Vian2g00750 338 MobiDBLite consensus disorder prediction 264 278 - -
Vian2g00750 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Vian2g00750 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 311 IPR039605 GO:0003680
Vian2g00750 338 ProSiteProfiles PPC domain profile profile. 124 265 IPR005175 -
Vian2g00750 338 CDD DUF296 129 219 IPR005175 -
Vian2g00750 338 Gene3D - 129 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00750 Vian-Chr2 10831589 10834809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00750 6 272 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 53.156 9.87e-89 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00750 - - gmx:100777213 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00750 2 10831589 10834809 Vian2g00750 2 10831589 10834809 ECH
Vian2g00750 2 10831589 10834809 Vian9g00827 9 12435346 12438665 PCT