Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00726 ATGAGTTTCTTTCAGGGAATTATTGATTCCTTAAACTCCATCTTCGTCCCAGATAACAATCACAACACCGCAAATTCTTCTTCTTCTTCTTCTTCTTCTTCAAAGGATCCAATGGAAGCTCCTCCTCCTTCCGTTTCGAACGAGCGCGTGGCTTACAAGCTGAAAGGCTACTTCGATTTGGCGACGCAGGAGATCGCGAAGGCCGTTAGGGCTGAGGAATGGGGTTTGGCAGACGACGCGCTTCTTCACTACAGGAACGCGCAATCGATCCTTGTCGAAGCTAATTCAACTCCAGTTCCTTCCTACATCACCTCCAGTGAGCAGCAGAAGGTGCAGTCATATCGTGAGAAGATATCCAAATGGCAGAGTCAAGTTTCTGAGAGATTGCAAACTCTCTCTAGACGAGCTGGTAGCTCATCAGCCAATCAGAGCACCGCTGCAATACCGATCAAGCCATTGGGTACTAGAAAAAATGTGTTACAAAAGCCTCCTCAAAGAATAGGTCAGGTGAATAAAGTTGGAAGCCCAAAATCGAGTCAAGCATCTGGTGTAAATTATGATACCAAACTAGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCATCTGTTAGATGGGAAGATGTTGCCGGGCTCGAAAAGGCAAAGCAATCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTTACTGGTCTTCGAAGGCCAGCCAGAGGTTTGCTTCTCTTTGGTCCACCTGGTAATGGAAAAACCATGCTTGCCAAAGCAGTGGCGTCAGAATCACAAGCAACATTTTTTAATGTCACGGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCAAGACAGCCATCAGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCCAATGAGAATGATGCCAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTAATTGGTGCGACAAATAAGCCACAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATACGTACCTTTACCAGATGAAAATGTTCGAAAGCTTCTGTTAAAACACAAGCTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTAGAGAAGCTTGTAAAAGAGACAGAAGGATATTCTGGTAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGTTGGGTGCTGACATTCTTACTGTTAAGGCTAATCAGGTAAGAGGACTAAGGTACAAGGATTTTAAGAAGGCAATGGCTGTAATTAGACCGAGCTTAATCAAAAGTAAGTGGGAAGAGCTTGAGCGCTGGAATAAGGAATTTGGCTCTAATTGA 1440 0.4299 MSFFQGIIDSLNSIFVPDNNHNTANSSSSSSSSSKDPMEAPPPSVSNERVAYKLKGYFDLATQEIAKAVRAEEWGLADDALLHYRNAQSILVEANSTPVPSYITSSEQQKVQSYREKISKWQSQVSERLQTLSRRAGSSSANQSTAAIPIKPLGTRKNVLQKPPQRIGQVNKVGSPKSSQASGVNYDTKLVEMINTAIVDRSPSVRWEDVAGLEKAKQSLMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVTAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRKLLLKHKLKGQAFSLPSRDLEKLVKETEGYSGSDLQALCEEAAMMPIRELGADILTVKANQVRGLRYKDFKKAMAVIRPSLIKSKWEELERWNKEFGSN 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00726 479 CDD RecA-like_spastin 209 372 - -
Vian2g00726 479 Gene3D - 46 136 - -
Vian2g00726 479 PANTHER AAA DOMAIN-CONTAINING 101 478 - -
Vian2g00726 479 MobiDBLite consensus disorder prediction 22 46 - -
Vian2g00726 479 FunFam Spastin, putative 203 387 - -
Vian2g00726 479 Pfam AAA+ lid domain 399 430 IPR041569 -
Vian2g00726 479 FunFam AAA-type ATPase family protein 375 457 - -
Vian2g00726 479 CDD MIT_spastin 54 132 - -
Vian2g00726 479 MobiDBLite consensus disorder prediction 22 40 - -
Vian2g00726 479 SMART AAA_5 240 376 IPR003593 GO:0016887
Vian2g00726 479 Gene3D - 203 473 IPR027417 -
Vian2g00726 479 ProSitePatterns AAA-protein family signature. 346 365 IPR003960 GO:0005524|GO:0016887
Vian2g00726 479 SMART smart 54 131 IPR007330 -
Vian2g00726 479 Pfam ATPase family associated with various cellular activities (AAA) 244 374 IPR003959 GO:0005524|GO:0016887
Vian2g00726 479 Gene3D - 375 457 - -
Vian2g00726 479 FunFam AAA-type ATPase family protein 47 136 - -
Vian2g00726 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 476 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00726 Vian-Chr2 10043141 10048124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00726 185 464 Calmodulin-binding Proteins AT3G56690 38.408 1.21e-48 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00726 K13254 - gmx:100780946 847.425