LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian2g00714	ATGGTGAGAGGAAAGACTCAAATGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTTACCTTCTCCAAGCGGCGCAATGGGTTGCTGAAGAAGGCCTTTGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTCCAAGAGGAAAGCTTTATGAGTTTGCAAGCTCCAGCATGCAGGAGACAATTGAACGCTACCGCAGGCATAACAGGAGTGCTCAAACAGTGAACAGATCTGATGAGAAGAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGGAAGCTCTTGGGAGAAGGATTGGGTTCATGCTCCTTGGAAGAACTGCAACAGATAGAACAACAGTTGGAAAGGAGTGTAAGCAACGTTCGTGCAAGAAAGAATCAGGTTTACAAGGATCAAATCGAGCAACTAAAAGAAAAGGAAAGAACCCTATATACTGAAAATGCCAGGCTGTGTGAGCAGTATGGTATCCAGCAACAGCCAGGAACAAAGGAAGTGAGAGAAAATCAACCGTATGAAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAATTGTTCATCGGACTACCCAGGTCTACTTTAACATAA	636	0.4387	MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHNRSAQTVNRSDEKNMQHLKQETANLMKKIELLEASKRKLLGEGLGSCSLEELQQIEQQLERSVSNVRARKNQVYKDQIEQLKEKERTLYTENARLCEQYGIQQQPGTKEVRENQPYEESSPSSEVETELFIGLPRSTLT	211

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian2g00714	211	MobiDBLite	consensus disorder prediction	173	211	-	-
	Vian2g00714	211	ProSiteProfiles	K-box domain profile.	87	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Vian2g00714	211	Coils	Coil	80	107	-	-
	Vian2g00714	211	CDD	MADS_MEF2_like	3	78	IPR033896	GO:0000977\|GO:0045944
	Vian2g00714	211	Gene3D	-	14	97	IPR036879	GO:0003677\|GO:0046983
	Vian2g00714	211	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Vian2g00714	211	SUPERFAMILY	SRF-like	3	83	IPR036879	GO:0003677\|GO:0046983
	Vian2g00714	211	Pfam	K-box region	83	170	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Vian2g00714	211	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Vian2g00714	211	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Vian2g00714	211	MobiDBLite	consensus disorder prediction	173	198	-	-
	Vian2g00714	211	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Vian2g00714	211	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Vian2g00714	211	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Vian2g00714	211	FunFam	MADS-box protein SOC1	14	95	-	-
	Vian2g00714	211	Coils	Coil	121	170	-	-
	Vian2g00714	211	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	181	-	-
	Vian2g00714	211	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian2g00714	Vian-Chr2	9814105	9831241	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian2g00714	1	156	MADS-box Gene Family	AT2G45660	78.205	6.17e-87	252

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Vian2g00714		K-box	9.8e-28	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian2g00714	-		-	gmx:100037477	369.777

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian2g00714	2	9814105	9831241	Vian9g00768	9	10411323	10437767	PCT