Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00713 ATGAACAAAAATTTAAGAAATTTGGAAGTTCAAGATAAGCTGGGATATAAACGATGGAGTCCTACTAGAGAACAAGTTGCTCTACTAGAGGCCCTTTTTGCATTTGGAATACGAAATCCAAATAGAGAGCAAGTGCACGAGATTGCAACGAGACTTAAAGTTTATGGGGAAATTGGAGAGTATAGCGTTTATTGTTGGTTTCAAAATTATGGGTATCGTGAAAAGCAACGATGCTTGAAGCAAAGCACCGCCACCACATCTTACTCTCCGCTGCCCCTCCTGTCGCCTTTTATGAATGATCTTTCATGGGTAGCGTCGTCGGTTCCAGATCGGGTGACGTTGGATCTTTTTTCAATCCCTCCCGTTCCTGAAAAGAGAGAGATTTCTCCTCCCCTACAGTTCCAGGTGAAGGCTCCTTCCGTTGAGCTTTCCTTACAATTGCCTTCCGCCGATGAATAG 459 0.4379 MNKNLRNLEVQDKLGYKRWSPTREQVALLEALFAFGIRNPNREQVHEIATRLKVYGEIGEYSVYCWFQNYGYREKQRCLKQSTATTSYSPLPLLSPFMNDLSWVASSVPDRVTLDLFSIPPVPEKREISPPLQFQVKAPSVELSLQLPSADE 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00713 152 SUPERFAMILY Homeodomain-like 13 77 IPR009057 -
Vian2g00713 152 ProSiteProfiles 'Homeobox' domain profile. 12 77 IPR001356 GO:0003677
Vian2g00713 152 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 14 84 IPR044555 GO:0003700|GO:0099402
Vian2g00713 152 Gene3D - 16 83 - -
Vian2g00713 152 SMART HOX_1 14 81 IPR001356 GO:0003677
Vian2g00713 152 Pfam Homeodomain 17 76 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00713 Vian-Chr2 9794793 9795353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00713 18 83 Wox Gene Family AT5G05770 48.485 2.66e-17 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian2g00713 Homeodomain 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00713 - - vum:124821198 263.077