Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00704 ATGAGTTTTGGGGGGTTTCTTGAGGTCAAACAAAGTGGTGGAGGGGGTAGGATCGTATCAGATATTCCTTACAGCAACGGTTCCAACCACAGCAACGATATAATGCCCTCTGGTGCAATCTCGCAGCCTCGTTTAGCCAGTCCTACGTTGGCCAAATCCATGTTTAACTCTCCTGGCCTTTCTCTTGCGCTTGTGAGAATCATCCCTACCCTTTTACTTCTCTTCTTCTTGTTCATAAGGGTTTTTGTTTTGGGTGGTTCTTTTTTTTTTCTTCTTACTTTGGTTTTCTTGTTTTGTTTGGCAAAAAAAACACAGCAAAGTGATGTCGACGGACAAGGGGATATGAACAGATTAATGCCCGAGAATTTTGAGCAAAATGGGTTGAGAAGGAGCCGGGAAGAGGAGCATGAAAGCAGATCTGGCAGTGATAACATGGATGGAGCTTCTGGTGATGATTTTGATGCCGCCGACAACCCACCAAGAAAAAAACGTTATCACCGACACACTCCTCAGCAAATTCAAGAGCTTGAAGCGCTTTTCAAGGAGTGTCCTCACCCGGATGAGAAGCAAAGGCTTGAACTCAGCAGAAGGCTGAATTTGGAAACGAGGCAAGTAAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGACACAATTGGAACGGCACGAGAACTCGCTGCTAAGGCAAGAGAATGACAAGCTTAGAGCGGAGAACATGTCTATGAGGGAGGCTATGAGAAATCCTATGTGCTCAAACTGTGGTGGTCCTGCAATGATTGGTGAGATTTCACTTGAAGAACAGCATCTCAGGATCGAGAATGCTAGGTTGAAGGATGAATTAGACCGTGTTTGTGCACTCGCTGGCAAGTTTTTGGGTCGCCCCATTTCTTCTTTAACAAGCTCAATTGGGCCTCCATTGCCAAACTCAAGCTTGGAGCTTGGGGTTGGGAGCAATGGTTTTGGAGGTTTGAGCACTGTGCCTGCAACATTGCCTGATTTTGGGGTGGGGATATCAAGCCCCTTAGCTATGATGTCACCTTCAACTAGACCAACTGCAACATCAACTGTGGTGACTGCTGGGCTTGACAGGTCAGTGGAGAGGTCTATTGTTTTGGAACTTGCTTTGGCTGCAATGGATGAGCTGGTGAAGATGGCTCAGACCGGGGAGCCTCTTTGGATCAGGAGTTTGGAAGGGGGAAGAGAAATTCTCAACTATGAGGAGTACACAAGGACAATGACACCTTGCATTGGTTTGAGACCCAATGGTTTTGTCACCGAGGCCTCTAGACAAACTGGCATGGTCATCATAAACAGCTTGGCTCTTGTTGAAACATTAATGGACTCAAATCGATGGTCAGAGATGTTCCCTTGTATGATTGCTAGAACCTCAACCGCTGAAGTTATATCTAATGGAATAAATGGAACTAGGAATGGTGCCCTTCAGCTTATGCATGCTGAACTTCAAGTCCTTTCGCCCTTGGTTCCTGTTCGTGAGGTCAATTTTCTACGCTTTTGCAAGCAGCACGCAGAGGGCTTGTGGGCAGTGGTGGATGTGTCCATAGACACCATCCGAGAAACTTCTGGTGCACCCACTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGCGTAGTGCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAACATGCAGAATACGACGAAAGCCAAGTTCACCAGCTGTACCGACCCTTGTTGAGCTCAGGCACGGGGTTTGGTGCACAACGTTGGGTTGCCACCCTTCAACGCCAATGCGAGTGCTTAGCCATTCTAATGTCCTCAGCAGTTCCCTCTAGAGAACATTCAGCAATAAGCTCAGGTGGAAGGAGGAGCATGCTGAAGCTAGCACAACGCATGACGAACAATTTCTGTGCTGGAGTTTGTGCCTCCACGGTGCACAAGTGGAACAAGCTGAACGCGGGGAACGTGGGGGAGGACGTGAGGGTGATGACAAGGAAGAGCGTGGACGACCCCGGCGAGCCGCCGGGTATTGTTCTCAGCGCAGCCACCTCAGTGTGGCTGCCGGTGTCGCCCCAAAGACTTTTCGACTTCCTGCGCGACGAGCGGCTCCGGAGTGAGTGGGACATCCTCTCGAACGGTGGACCCATGCAAGAGATGGCTCACATTGCCAAGGGACAAGACCATGCTAACTGTGTCTCCCTCCTCAGAGCCAGTGCTATGAATGCGAACCAGAGCAGCATGTTGATTTTGCAGGAGACGTGCACCGACGCGTCGGGGTCGCTTGTGGTGTACGCGCCGGTGGACATTCCCGCAATGCACGTGGTGATGAACGGCGGCGACTCTGCCTACGTGGCGCTTCTCCCGTCGGGGTTCGCCATCGTCCCGGATGGATCCGCGGCTGGCGGAGAGCAACACGGGGGCGCGTCGCAAAAGAGGACGGGTGGATGTCTTCTGACGGTGGCGTTCCAGATTCTCGTGAACAGCCTCCCGACGGCGAAGCTGACGGTGGAGTCGGTGGAGACCGTGAACAACCTCATCTCGTGCACAGTGCAGAAGATAAAAGCAGCGCTTCACAGCGAGAGTTGA 2577 0.5056 MSFGGFLEVKQSGGGGRIVSDIPYSNGSNHSNDIMPSGAISQPRLASPTLAKSMFNSPGLSLALVRIIPTLLLLFFLFIRVFVLGGSFFFLLTLVFLFCLAKKTQQSDVDGQGDMNRLMPENFEQNGLRRSREEEHESRSGSDNMDGASGDDFDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSMREAMRNPMCSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLTSSIGPPLPNSSLELGVGSNGFGGLSTVPATLPDFGVGISSPLAMMSPSTRPTATSTVVTAGLDRSVERSIVLELALAAMDELVKMAQTGEPLWIRSLEGGREILNYEEYTRTMTPCIGLRPNGFVTEASRQTGMVIINSLALVETLMDSNRWSEMFPCMIARTSTAEVISNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGLWAVVDVSIDTIRETSGAPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGTGFGAQRWVATLQRQCECLAILMSSAVPSREHSAISSGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHANCVSLLRASAMNANQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGSAAGGEQHGGASQKRTGGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHSES 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00704 858 Pfam START domain 373 597 IPR002913 GO:0008289
Vian2g00704 858 SUPERFAMILY Homeodomain-like 145 219 IPR009057 -
Vian2g00704 858 ProSiteProfiles START domain profile. 364 600 IPR002913 GO:0008289
Vian2g00704 858 MobiDBLite consensus disorder prediction 126 142 - -
Vian2g00704 858 SUPERFAMILY Bet v1-like 625 851 - -
Vian2g00704 858 SMART HOX_1 160 223 IPR001356 GO:0003677
Vian2g00704 858 Gene3D - 150 235 - -
Vian2g00704 858 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 158 855 IPR042160 -
Vian2g00704 858 MobiDBLite consensus disorder prediction 108 169 - -
Vian2g00704 858 SMART START_1 373 597 IPR002913 GO:0008289
Vian2g00704 858 FunFam Homeobox-leucine zipper protein HDG1 149 235 - -
Vian2g00704 858 SUPERFAMILY Bet v1-like 367 597 - -
Vian2g00704 858 FunFam Homeobox-leucine zipper protein GLABRA 2 373 596 - -
Vian2g00704 858 CDD homeodomain 161 219 IPR001356 GO:0003677
Vian2g00704 858 Pfam Homeodomain 162 217 IPR001356 GO:0003677
Vian2g00704 858 CDD START_ArGLABRA2_like 368 596 - -
Vian2g00704 858 ProSitePatterns 'Homeobox' domain signature. 194 217 IPR017970 GO:0000981|GO:0006355
Vian2g00704 858 Coils Coil 213 248 - -
Vian2g00704 858 ProSiteProfiles 'Homeobox' domain profile. 159 219 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00704 Vian-Chr2 9587061 9592225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00704 1 858 Homeobox Transcription Factor Family AT3G61150 62.217 0.0 1029
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian2g00704 START 5.5e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00704 K09338 - gmx:100787537 1484.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00704 2 9587061 9592225 Vian2g00704 2 9587061 9592225 ECH