Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00685 ATGGGGGTTGGTGGTAATTTCTGGGAGCTGCTAAAGCCCTATGCTCGTCGCGAGGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCTGTGGACCTATCATTCTGGATTGTTCAGCATGAGAATGCTATGAAGGCCACTCATGTCAGAAAACCTCACCTCAGACTTACCTTCTTCCGCACCATCAATCTCTTTTCCAAGTTTGGGGTACTTCCTGTGTTCATTGTTGATGGGACTCCATCGCCGTTGAAAGCACAGGCCAGGATTGCAAGATATTTTGGGTCTTGTGGCATTGAGCTGACTAGCTTGCCAGTCTCTGAAGGTGTTTCAGCAGAAAGGAGCAGCCTGTTTTCAAGTCGAGTTCAAGAATGTGTGGAACTGGTCAAACTACTTGGAATGCCTGTACTACAGGCTAAAGGAGAGGCCGAAGCACTCTGTGCTCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCAGACAGTGATGCATTCCTCTTTGGGGCAAAATGCATTATAAAATGTTTCTGTCCCAATTCCAAAGAACCATTTGAATGCTACAACATGTCAGATATTGAAGCTGGACTTGGATTGAAGAGGAAACACTTGATAGCTATCTCTCTTTTGGTTGGAAATGATCATGATATGAATGGTGTTCGAGGAATTGGGCTTGATAATGCACTTCATTTTGCTAAAGCTTTTAATGAAGATGATATATTGAATAGATTACAGGAGATAGGCAAAGGGGATACTTCACAAATTCCCAGCTGCACTAAATTTGAGGACAACATAGATGTTGATGGAAACTGCCCGAATACAAAACAACCTCATTGCTCATTATGTGGGCATCCTGGCAGCAAGAAAGATCATATGAAATTTTCTTGTGAATCCTGTGTCACAAAGGATGATGAAGGCTGCCAGAGAAAACCAGAGGGTTTTAAATGTGATTGCTGCTCATGTGTTTTGAATAGGAGACATAAGGAGCAGAAACGAGAGGAAAATCGGTACTCAAAAATTTGTCACAAAATTGCGGAGGAGCCAAACTTTCCCAAAGATGAAATCATTGACATGTACCTATGCAATGACAATGGTTACTTTTCAGCAAGTGATGGTCCTCGGATCATATGGGGAAAACCCAATATTGAGATGCTGATTGATTTTTTAAACTTTCATCAGCATTGGGAACCATCCTACATTCGACGGACTATGTTTCCTATGATGTCCACTATCTTTCTGAGAGATATGTCTACTCCTACGGGAGAAACTTTGTTATTTGGGCAATATGAGTTTGATTCGGTTGAACGTGTGAAAATGAGATATGGATATCAGTTTTATGTGGTCAAGTGGAAACGTGCAGGTGTAAACATTAACACCAGCAAAGTTCCATCAAATGAATCCAGTGTGCAACAAGATGTAGTAGAGCTTGATGAAATGGTGGATCTACTGGACGATGCTCCTGAGATTCATCAGTTGGTACAAGATAAACATGATCTTCTCCAAACTCAAGAATATATACATATCTTGGATTCTTTTTTCTCCATTGTAATGTTTAGATTTTTGCCACTGCAACATCTAGTTTTGCTGTGTAAAATTTCCAACTTTGCTGATAAACACATGGCTGCCCTCGTGAGTGAAAGATTTTCAAGTTCAGGAAAGTTGAAGGTACAACTCATGTTTCATATTGTTTATAGAAGCTCAATATGTACTGTTTTGACCGAGGATATTGTCAAGTGTCATGTGCGCTCTCATATGTCATCGTTGGTTGGAAGCACATATTCAAAATCCAGAAGTGCCAAAGTGGTTGCTAACATTCCCTTTAATATCATAATATTTCTTGTGTTCAAAGTGTAG 1851 0.4036 MGVGGNFWELLKPYARREGFDFLRNKRVAVDLSFWIVQHENAMKATHVRKPHLRLTFFRTINLFSKFGVLPVFIVDGTPSPLKAQARIARYFGSCGIELTSLPVSEGVSAERSSLFSSRVQECVELVKLLGMPVLQAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCIIKCFCPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDMNGVRGIGLDNALHFAKAFNEDDILNRLQEIGKGDTSQIPSCTKFEDNIDVDGNCPNTKQPHCSLCGHPGSKKDHMKFSCESCVTKDDEGCQRKPEGFKCDCCSCVLNRRHKEQKREENRYSKICHKIAEEPNFPKDEIIDMYLCNDNGYFSASDGPRIIWGKPNIEMLIDFLNFHQHWEPSYIRRTMFPMMSTIFLRDMSTPTGETLLFGQYEFDSVERVKMRYGYQFYVVKWKRAGVNINTSKVPSNESSVQQDVVELDEMVDLLDDAPEIHQLVQDKHDLLQTQEYIHILDSFFSIVMFRFLPLQHLVLLCKISNFADKHMAALVSERFSSSGKLKVQLMFHIVYRSSICTVLTEDIVKCHVRSHMSSLVGSTYSKSRSAKVVANIPFNIIIFLVFKV 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00685 616 Gene3D - 198 260 - -
Vian2g00685 616 SMART xpgn3 1 97 IPR006085 GO:0004518
Vian2g00685 616 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 414 IPR036279 -
Vian2g00685 616 FunFam Flap endonuclease GEN-like 1 2 197 - -
Vian2g00685 616 FunFam Flap endonuclease GEN-like 1 198 257 - -
Vian2g00685 616 CDD PIN_GEN1 2 202 - -
Vian2g00685 616 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 465 IPR006084 -
Vian2g00685 616 Gene3D - 5 197 - -
Vian2g00685 616 SMART xpgineu 128 198 IPR006086 GO:0004518
Vian2g00685 616 Pfam XPG N-terminal domain 1 87 IPR006085 GO:0004518
Vian2g00685 616 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Vian2g00685 616 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Vian2g00685 616 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Vian2g00685 616 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Vian2g00685 616 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Vian2g00685 616 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Vian2g00685 616 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00685 Vian-Chr2 8989672 8998962 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00685 1 313 Core DNA Replication Machinery Family AT5G26680 25.575 2.10e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00685 K15338 - gmx:100779848 833.558