Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00646 ATGGAATCAGAGAGATACACCAGTCAGCGGTGGCGTCCTACCGAAGATCAGACCCAGATGATGACCAGAATCTACAACTTTGGGGTCACACACCCAAGTAGAGCGCAAGTTGTCGAGATCGCGTCTCGACTAAGGATCTTCGGAGATGCCAGCGAATACAACGTACATTGCTGGTTCAACAATCACGGCAATCGGGTCAGGCGCTGGCAAGCGGAGATAGACCCTACTGGCACTCAGTTTTCGCAACTGCCACTATTAACACACAATTTTTTTTTTTTTTTTTGGCCGAAAGATTATGACTGGGTGATTATGAGGGCACCGAGGCTGCTGAATCTGTTTCCCGTTCCGATCATCATCGACGACGATAGGGACGTACGACAAATCCCGCCACCCATGCTTCTCACATTCCGAACCAGAGCTCCCTCAACGGAGCTCTCCCTTAGACCTCCACAACCAGCTCGAGAATTCTTTCGTTGA 477 0.501 MESERYTSQRWRPTEDQTQMMTRIYNFGVTHPSRAQVVEIASRLRIFGDASEYNVHCWFNNHGNRVRRWQAEIDPTGTQFSQLPLLTHNFFFFFWPKDYDWVIMRAPRLLNLFPVPIIIDDDRDVRQIPPPMLLTFRTRAPSTELSLRPPQPAREFFR 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00646 158 ProSiteProfiles 'Homeobox' domain profile. 4 69 IPR001356 GO:0003677
Vian2g00646 158 CDD homeodomain 10 70 IPR001356 GO:0003677
Vian2g00646 158 Gene3D - 8 73 - -
Vian2g00646 158 Pfam Homeodomain 8 68 IPR001356 GO:0003677
Vian2g00646 158 PANTHER WUSCHEL-RELATED HOMEOBOX 13 7 72 IPR044559 GO:0003700
Vian2g00646 158 SUPERFAMILY Homeodomain-like 9 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00646 Vian-Chr2 8393098 8393637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00646 7 96 Wox Gene Family AT5G59340 34.444 2.15e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian2g00646 Homeodomain 7.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00646 - K09593 vum:124821070 263.462