Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00601 ATGAGTGTAGAGAGTGAGAAAGCAGAGAGGCAGAAAGAGAAAGGGTTTGACTGTGAATTGCGACATCGCGTGTGGCCCAAACAGTGGAATCACCGAATCCGTCAAGTTCGGTCCTCTGCAGGGAAAGATCTGTCCCCAATTGCCCGAAAGTTGCGGATTCTAGAGAGAGAAAGTGGGTGGATTCTGAGATTCTGCCATTTCTGGGTGGTGAATTCTGGGTCATTTCAACAGCAGCTGCTTAGAAAACCTGAAGGGAGTGAAGCGTTTTTGGCATATCAAGCAGGTCTTCAAGGAATATTTGGGAGTAACAATTTCCCATCTAGTTCCATGCAACTGCCTCAACAGTCTCGGAAATTTGTTGATCTAGCTCAGCATGGATCCAACCAGGGTCAAGGTGTTGAGCAGCAAATGCTAAATCCTGCACAAGCAGCATATTTTCAATATGCCCTGCAGGCTTCACAACAAAAGTCTGCTTTGGCAATGCAGCAACCTAAAATGGGAATGCTGGGCTCTTCATCTGTAAAGGATCAGGACATGCGAATGGGAAATCTGAAAATGCAGGAGCTTATGTCCATGCAGGCAGTAAATCATGCCCAAGCATCATCGTCTAGAAATTCATCTGACCATTTTAATCATGGGGAAAAACGGGTAGAGCAAGGGCAGCAGCTAGCACCTGCTAGAAAGAGTGAAGGAAATCCTTCAAGTCAGGGACCAGCTGTTGGAAATATAGTACCTGGAAACATTATAAGACCTGTGCAAGCTCTGGCAAATCAACAGAACATCTCAAACACTATGAACAACCAGATTGCAATGTCTGCTCAATTGCGGGCTGTGCAGGCATGGGCACATGAACAAAATATTGATATGTCACATCCTGCAAATGCTCAGTTAATGGCTCAGCTTATTCCATTGATGCAATCAAGGATGGTTCAACAACCGAAGGTAAATGATACTAACTCAGGTGCACAGTCATCACCTGTCCCCGTTTCAAACCAGCAGGTTACTTCTCCAGCAGTGGCAAGTGAAAGTTCAGCGCGTGCTAATTCATCTGGCGATGTGTCTGCACAGTCAGGTTCTGGGAAAGGCAGGCAGATGGCTCCACCCAACCATTTGAGCCCACCAATTAGTGCTGGTATAGCCAGTACCTCTAGTGACATGACTGTGCAGCAATTCAGTCTTCATAGCAGAGACACTCAAGGATCTTTGAAGCAATCAGTTCTAACTGGAAATGGAATGCATCCACAGCAGACCTCAGCAAACATGAACATTGGTGCAGATCATCCTCTGAATGCGAAAGCATCATCATCTTGTCCAGAACCTGCAAAAATGCAGTACATCAGGCAATTAAACCAATCTGCTTCTCAGGGTGGAGGTTTGTCAAATGAAGGTGGATCAGGAAATTACACCAAAACTCAAGCGGGGCCATCTCAGACACCTCAACAAAGAAATGGTTTCACCAAACAACAGCTTCATGTTCTTAAGGCACAAATACTAGCATTTCGGCGTCTGAAGAAAGGAGAAGGTGCACTTCCCCAAGAACTTCTTCGGTCCATCAATCCACCACCTCTTGATTTGCAAGTGCAGCAGCCAATTCATTCTGGAGGAGCACAAAATCAAGAGAGATCTGCTGGAAATATTGTGGCTGAACAGCCAAGGCAGAATGAGGCCAATGCCAAAGATTCACAGCATATGCCATCCATTAGTGGAAAGATCTCTTCAAAGAAGGAAGCCTTTATGAGAGATGAGAGCAATCCTGTAACAGCAGTTCATATGCAGGCCACGTCTCCTGTGATAAAGGAATCTGCTGGAAGGGAAGAGCAGCAGTCTGTTGTATGCTCTGCTAAGTCTGATCAGGAAAATCAACATGGAATTAACAGAACGTCTGTTAGAAACGAGTTAGTATTAGACAAGGGAAAAGCTGTTGCTACTCCCCAGTCTTCCGTAGCTGATACAGTGCAACCTAATAAACCTTCTCAGGCGAGCACTGTTGCCCAAGCAAAGGATATGGCTTCCACCGGAAAATACCATGGACCCCTATTTGATTTTCCTTTCTTCACCAGGAAACATGATTCCTTTGGGTCATCAATGATGCTCAACAACAACAACAATTTGTCTCTGGCATATGATGTGAAAGAACTTCTGTTTGAGGAAGGCATGGAGGTCATTACCAAGAGAAAGACAGAGAATTTGAGGAAGATTGAAGGTTTGCTTGCAGTAAACTTAGAGAGGAAAAGAATTAGGCCAGATCTTGTGTTAAAGTTGCAAATTGAAGGAAAAAAGCTTCGTCTTTTAGATCTTCAGGCACGTTTAAGGGACGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGGAAGTTTGTTAGACTGTGTGAACGTCAGCGTATGGAACTTGCTAGACAAGTTCAGGCATCTCAGAGAGCTTTAAGGGAGAAGCAACTGAAATCTATATTTCAGTGGCGCAAGAAGCTTCTTGAAACACATTGGGCCATTCGTGATGCCCGTACTGCTCGCAACAGGGGAGTGGCTAAATATCATGAAAGGATGTTAAAAGAGTTCTCAAAACGTAAGGATGATGACAGAAATAAAAGGATGGAAGCCTTGAAAAACAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAACATCCAAGGGGATGCTGCGGAGAGATATGCTGGTCTTTCCGAAGAAGAAGTCAGAGCCGCAGCAGCTTGTGCTGGAGAAGAAGTGATGATTAGAAATCGTTTTATGGAGATGAACGCCCCTAAGGACAGTTCCTCTGTCAACAAGTATTACAGCCTTGCTCATGCAGTGAGTGAGAAGGTTGTACGTCAACCATCAATGTTGCGTGCTGGAACACTTAGAGACTATCAGTTGGTTGGTTTGCAATGGATGCTTTCCTTGTATAACAACAAATTAAATGGAATTTTGGCAGATGAGATGGGTCTTGGAAAAACTGTGCAGGTTATGGCATTAATTGCCTATTTGATGGAGTTTAAAGGAAATTATGGCCCACATCTTATAATAGTCCCAAATGCTGTTATGGTTAACTGGAAGAGTGAGTTGTATACTTGGTTACCATCTGTGTCATGCATTTTTTATGCTGGAGGGAAGGATTACCGGACAAAGTTATATTCACAAGAGATTATGGCTATGAAATTTAATGTCCTGGTGACTACTTATGAGTTCATCATGTATGATCGGTCGAGGCTTTCAAAAATTGACTGGAAGTATATAATAATCGATGAAGCACAGAGAATGAAGGATAGGGAATCAGTTCTAGCTCGTGATCTTGATAGATATCGTTGTCAAAGACGCCTGCTTCTGACAGGAACACCTTTACAGGAGCCAAATTACCTGATGAGGCTAGATTCAGATCTAACAGATGACAAATCCTTGTCTTGCCAAGCTGGGGAAGGTTCCACTCAAAATACAGAAGATGACTGGCTTGAGACTGAAAAAAAAGTTATCATTATCCATCGACTTCATCAAATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGAAGTTGAGGGTTCACTACCACCAAAGGTCTCTATAGTTTTACGGTGTAAGATGTCAGCTGTGCAGAGTGCCATTTATGACTGGGTCAAATCAACGGGTACCCTTCGACTTGATCCCGAGGGTGAGGAATCTAAGATTCAAAAGAATCCACTCTACCAGGCAAAAGAGATCCTTATAAAGCTTCAAAGAACTGGTCATCGAGTTTTGCTGTTCAGTACCATGACAAAACTTCTAGACATATTGGAAGATTACTTGAATCTGCGAAGGTTTGTGTATAGAAGAATTGATGGGACTACTAATTTGGATGACCGTGAATCAGCTATAATGGACTTTAATAGCCCTGATTCAGACTGTTTCATCTTCTTGCTTAGCATTCGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTTATTTATGATCCTGATCCTAACCCGAAAAATGAGGAGCAGGCTGTGGCCAGAGCTCATCGTATTGGACAGAAAAGAGAAGTCAGAGTTATCTACATGGAGGCTGTTGTTGACAAAATCTCTAGCCATCAGAAGGAGGATGAACTGAGAAGTGGAGGCACTGTCGATATGGAGGATGAATTTGTGGGTAAGGATCGCTATATAGGATCAGTTGAGAGCCTCATAAGGAACAATATTCAACAATACAAGATAGATATGGCCGATGAGGTTATCAATGCTGGACGTTTTGATCAAAGGACAACACATGAAGAGAGGCGTTTGACTTTAGAGACATTGTTACATGATGAAGAAAGGTATCAAGAAAATGTCCACAATGTTCCTTCTCTTCAGGAGGTAAATCGCATGATTGCCAGGAGTGATGAGGAAGTGGAGTTGTTTGATCAAATGGATGAAGAACTGGATTGGCCTGAGGAGATGATGCAACATGATGAGGTGCCTCAGTGGCTTCGAGCCAATACAAGAGAAGTGAATGCTGCTATTGCTTCTTTGTCTAAAAGACCATCAAAGAACATTTTATTGGGTGGTAGTGTTGGCGTGGACAGTGAGGTGGGCTCAGAAAGGAGAAGGGGACGGCCCAAGGGAAAAAAACATCCTAATTATAAAGAGTTGGAAGATGAAAATGGAGAATATTCTGAAGCAAGCTCTGAAGACAGAAATGAGTATTCTGCACAAGAAGAAGGGGAAATTGGAGAGTTTGAAGATGATGTTTATAGTGGGGCTGATGGGCATCAATTGGAAGAGGATGGTTTAACTTCTGATGCTGGATATGAAATTGCTCGTTCTTCAGAAAATGCTAGGCATAATCATGTGGCTGAAGAGGCTGGTTCCTCAGGATCATCCTCTGACAATCAAAGATTGGTGCAAACAGTTTCACCTTCAGTTTCTGCTCAGAAATTTGGTTCTCTCTCCGCATTGGATGCCAGGCCAAGCTCCATTTCAAAAATTATGGGAGACGACTTGGAAGAAGGGGAAATTGCAGTATCAGGTGATTCGCACATTGATCATCAACAATCAGGAAGTTGGATTCATGAACGAGATGAGGGGGAAGATGAACAAGTTTTGCAGAAACCCAAGATTAAGCGCAAGCGTAGTCTTCGTGTTCGTCCCCGCCAAGCTGTGGAAAGGCTTGAGGACAAGTCTGGCAGTGAGATGAAATCTCTTCAACGGGGAGAATCATCTCTTTTGGCAGACTATAAATATCAAATGCAAACAAGGATTGATACGGAATCAAAATCATTTGTAGACAACAATGCCGGCAAGCATGATAAGAATGCAACATCATTAAAAAACAAGCAAAAGTTACCTTCAAGGAAAGCAGCTAATACATCCAAATTACATGGGTCACCTCAGTCTAATCGTTTGAATTGCTCATCTGGTCCTTCTGATGATGGTGAACACCCTAGAGAAAGTTGGGAGGGGAAGCCTCTAAATTCAAATGGATCTTCAGTTCATGGCACTAGGACGACTGAGATAATCCAAAGAGGATGCAAGAATGTAATTAGCAAGCTCCAAAGGAAAATAGACAAGGAAGGCCATCAGATTGTACCTTTGCTAACAGATTTATGGAAGAGGATTGAGAATTCTGGGTATGCGGGTGGATCTGGGAGTAGTCTGTTGGATTTACGGAAGATTGACCAGCGGATTGATAGAATGGATTACACCGGAGTAATGGAGCTCGTGTTTGATGTACAGTTTATGTTGAGGGGTTCAATGCATTTCTACGGATATTCATATGAGGTGAGATCTGAAGCAAGGAAGGTTCATGATCTATTCTTTGATATCCTGAAAATTGCGTTCCCAAATACAGATTTTGGAGAAGCAAGAAGTGCAATTTCTTTCTCCAGCCAAATTCCTGCCGGTACCACCGCATCTCCAAGGCAAGTGACAGTTGGCCCCAGCAAAAGGCACAGAGCGACCAATGATGTGGAAACCGATCCAATCCCTTCACAGAAGTTGGCAGCTTCTAATGGCGAAAGCAGCAGGTTCAAAGGTCATTTGAAGGAGTCAAAAACTGGAAGTGGCAGCAGCAGTGCACGTGAGCAACCTCAGCAGGATAATCCTCCAATGCTCACTCATCCAGGTCAGTTGGTTGTGTGCAAGAAGAAAAGAAATGACAGAGAAAAGACATTGGGGAAGGGAAGGAGTGGATCAGCATGTCCTGTTTCTCCACCTTGTGCTATAAGAAGTCCAGGATCAGGTTCAACCCCAAAGGATGGTAGATGGGGTAGTCAACCATCTCAACACTCAAATGGGTCTGCTGGGTCAGTTGGTTGGGCAAACCCTGTAAAGCGTTTGAGAACAGATTCTGGGAAGAGGAGACCAAGCCATATGTAG 6369 0.436 MSVESEKAERQKEKGFDCELRHRVWPKQWNHRIRQVRSSAGKDLSPIARKLRILERESGWILRFCHFWVVNSGSFQQQLLRKPEGSEAFLAYQAGLQGIFGSNNFPSSSMQLPQQSRKFVDLAQHGSNQGQGVEQQMLNPAQAAYFQYALQASQQKSALAMQQPKMGMLGSSSVKDQDMRMGNLKMQELMSMQAVNHAQASSSRNSSDHFNHGEKRVEQGQQLAPARKSEGNPSSQGPAVGNIVPGNIIRPVQALANQQNISNTMNNQIAMSAQLRAVQAWAHEQNIDMSHPANAQLMAQLIPLMQSRMVQQPKVNDTNSGAQSSPVPVSNQQVTSPAVASESSARANSSGDVSAQSGSGKGRQMAPPNHLSPPISAGIASTSSDMTVQQFSLHSRDTQGSLKQSVLTGNGMHPQQTSANMNIGADHPLNAKASSSCPEPAKMQYIRQLNQSASQGGGLSNEGGSGNYTKTQAGPSQTPQQRNGFTKQQLHVLKAQILAFRRLKKGEGALPQELLRSINPPPLDLQVQQPIHSGGAQNQERSAGNIVAEQPRQNEANAKDSQHMPSISGKISSKKEAFMRDESNPVTAVHMQATSPVIKESAGREEQQSVVCSAKSDQENQHGINRTSVRNELVLDKGKAVATPQSSVADTVQPNKPSQASTVAQAKDMASTGKYHGPLFDFPFFTRKHDSFGSSMMLNNNNNLSLAYDVKELLFEEGMEVITKRKTENLRKIEGLLAVNLERKRIRPDLVLKLQIEGKKLRLLDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRALREKQLKSIFQWRKKLLETHWAIRDARTARNRGVAKYHERMLKEFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTNIQGDAAERYAGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDSSSVNKYYSLAHAVSEKVVRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYTWLPSVSCIFYAGGKDYRTKLYSQEIMAMKFNVLVTTYEFIMYDRSRLSKIDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQEPNYLMRLDSDLTDDKSLSCQAGEGSTQNTEDDWLETEKKVIIIHRLHQILEPFMLRRRVEEVEGSLPPKVSIVLRCKMSAVQSAIYDWVKSTGTLRLDPEGEESKIQKNPLYQAKEILIKLQRTGHRVLLFSTMTKLLDILEDYLNLRRFVYRRIDGTTNLDDRESAIMDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVRVIYMEAVVDKISSHQKEDELRSGGTVDMEDEFVGKDRYIGSVESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQENVHNVPSLQEVNRMIARSDEEVELFDQMDEELDWPEEMMQHDEVPQWLRANTREVNAAIASLSKRPSKNILLGGSVGVDSEVGSERRRGRPKGKKHPNYKELEDENGEYSEASSEDRNEYSAQEEGEIGEFEDDVYSGADGHQLEEDGLTSDAGYEIARSSENARHNHVAEEAGSSGSSSDNQRLVQTVSPSVSAQKFGSLSALDARPSSISKIMGDDLEEGEIAVSGDSHIDHQQSGSWIHERDEGEDEQVLQKPKIKRKRSLRVRPRQAVERLEDKSGSEMKSLQRGESSLLADYKYQMQTRIDTESKSFVDNNAGKHDKNATSLKNKQKLPSRKAANTSKLHGSPQSNRLNCSSGPSDDGEHPRESWEGKPLNSNGSSVHGTRTTEIIQRGCKNVISKLQRKIDKEGHQIVPLLTDLWKRIENSGYAGGSGSSLLDLRKIDQRIDRMDYTGVMELVFDVQFMLRGSMHFYGYSYEVRSEARKVHDLFFDILKIAFPNTDFGEARSAISFSSQIPAGTTASPRQVTVGPSKRHRATNDVETDPIPSQKLAASNGESSRFKGHLKESKTGSGSSSAREQPQQDNPPMLTHPGQLVVCKKKRNDREKTLGKGRSGSACPVSPPCAIRSPGSGSTPKDGRWGSQPSQHSNGSAGSVGWANPVKRLRTDSGKRRPSHM 2122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00601 2122 SUPERFAMILY Bromodomain 1884 1941 IPR036427 GO:0005515
Vian2g00601 2122 SMART QLQ_2 483 520 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vian2g00601 2122 MobiDBLite consensus disorder prediction 1682 1703 - -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 1714 1730 - -
Vian2g00601 2122 PANTHER SNF2/RAD54 HELICASE FAMILY 742 1225 - -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 1819 1833 - -
Vian2g00601 2122 CDD SF2_C_SNF 1191 1358 - -
Vian2g00601 2122 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 975 1140 IPR014001 -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 1618 1640 - -
Vian2g00601 2122 Pfam QLQ 485 518 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vian2g00601 2122 MobiDBLite consensus disorder prediction 1756 1833 - -
Vian2g00601 2122 FunFam Brahma1 1832 1955 - -
Vian2g00601 2122 FunFam ATP-dependent helicase BRM 954 1191 - -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 2043 2057 - -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 313 438 - -
Vian2g00601 2122 Gene3D - 932 1206 IPR038718 -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 1516 1572 - -
Vian2g00601 2122 SMART helicmild6 1264 1348 IPR001650 -
Vian2g00601 2122 Gene3D - 1227 1475 IPR027417 -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 1542 1570 - -
Vian2g00601 2122 SMART bromo_6 1830 1945 IPR001487 GO:0005515
Vian2g00601 2122 SMART ultradead3 959 1153 IPR014001 -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 194 244 - -
Vian2g00601 2122 Pfam SNF2-related domain 966 1230 IPR000330 GO:0005524|GO:0140658
Vian2g00601 2122 Coils Coil 1545 1565 - -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 1988 2002 - -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 1608 1640 - -
Vian2g00601 2122 Coils Coil 800 820 - -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 1774 1804 - -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 225 241 - -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 1963 2122 - -
Vian2g00601 2122 Coils Coil 760 780 - -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 2081 2101 - -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 451 483 - -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 2014 2035 - -
Vian2g00601 2122 Pfam Helicase conserved C-terminal domain 1241 1348 IPR001650 -
Vian2g00601 2122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 944 1182 IPR027417 -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 1675 1735 - -
Vian2g00601 2122 ProSiteProfiles QLQ domain profile. 484 520 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vian2g00601 2122 MobiDBLite consensus disorder prediction 375 424 - -
Vian2g00601 2122 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1238 1415 IPR001650 -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 313 363 - -
Vian2g00601 2122 Gene3D - 808 881 - -
Vian2g00601 2122 MobiDBLite consensus disorder prediction 1759 1773 - -
Vian2g00601 2122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1186 1478 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00601 Vian-Chr2 7352330 7364454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00601 1221 1383 RAD5 or RAD16-like Gene Family AT5G22750 34.132 4.48e-19 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian2g00601 SNF2_N 2.8e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00601 - - gmx:100811608 3414.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00601 2 7352330 7364454 Vian2g00601 2 7352330 7364454 ECH
Vian2g00601 2 7352330 7364454 Vian9g00657 9 8153879 8165788 PCT