Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00596 ATGGAGATGGAGAGGTACACCAGTCAGCAGTGGAAACCTACTGATGACCAGGTTAAAATGATGACCAATATCTTCAACCACGGGGTCACACATCCCAGTAGAGCCCAAGTTGTCGAGATTGCATCTCGAATCAGGGCCTTCGGAGAAGTCAGTGAATATAATGTACACTGCTGGTTCAACAATCATGGTAACCGGGTCAAGCGCTGGCAAGCGGAATTAGACCCCACTGGCACCGTATTTTCTCAGCTGCCGCTGTACATGTATGAATATGGCTGGGTAATTATGAAGGCGCCGAGGTTGCTGAACTTGTTCCCCGTTCCGATCATCATCGACGATGACAAGGACGAACGACAAATCCCTCAACCCATGCCTCTCGCATTCCGAACCAGAGCTCCCTCGACGGAGCTCTCCCTTAGGCCACCACAACCAGCTCGAGAATTTTTCCATTAA 450 0.5022 MEMERYTSQQWKPTDDQVKMMTNIFNHGVTHPSRAQVVEIASRIRAFGEVSEYNVHCWFNNHGNRVKRWQAELDPTGTVFSQLPLYMYEYGWVIMKAPRLLNLFPVPIIIDDDKDERQIPQPMPLAFRTRAPSTELSLRPPQPAREFFH 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00596 149 Pfam Homeodomain 9 68 IPR001356 GO:0003677
Vian2g00596 149 Gene3D - 8 73 - -
Vian2g00596 149 ProSiteProfiles 'Homeobox' domain profile. 14 69 IPR001356 GO:0003677
Vian2g00596 149 SUPERFAMILY Homeodomain-like 10 70 IPR009057 -
Vian2g00596 149 PANTHER WUSCHEL-RELATED HOMEOBOX 13 8 72 IPR044559 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00596 Vian-Chr2 7298166 7298713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00596 7 72 Wox Gene Family AT5G59340 36.364 2.51e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian2g00596 Homeodomain 8.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00596 - K11674 vum:124821070 276.559