Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00595 ATGATGGGTAACGGGGAGTCTTTGGATTTGTATAAACTTTTCATGGTGGTGAAGAAGAAAGGTGGTTATGATGCTGTTTGTAAGAATAGGCTGTGGGATTTGGTGGGGGAAGAGTATGGATTGGGTGTGAAGGTTGGTTCCGATGTGGAACATGTTTACAGCAAACACTTAAGTGCTCTAGAGACATGTTTGAAGAATGTTGCTGGTGGCAAGTTTGCTGAATATGGTTTAGAGGGTGATAGAGTTAAGTTTCAGAAGCATTTGATGGAGGCACACACTGAATCCATGTTGGACGATTCTGGTGAGGAGGAGGTAGGAGATGAACATGAGAGGAGGGATTGTGGCTGTCCGGATGGTAGGAAGCTCAGTGGTAGTAATAGAGTCAAGTGTGTGAAACCAGAGTCCAATGGGGCTGAACAGGAGAGTGCTTATAAGTATATAGATAGGAGTAAGTCATGTGGTAGTAATAGTGTGAAAGACAAGAATACAAATTCTAATGGGAATGAATATGATAATGTATGTGACTATCTAGAGGGGAGGAAGTTGTGTGGTACTAATAGGATGAACGGGGTGAATCCAGATTTCAATGAGGCCAAGAAAGTTAGAAGGCCGGAACTTGTTGATTTGGACATGCTGGAGGACCACGACAAGGGTGAGCCTATTGTAGTAAAATTTTGCGGATTTAATACTGAAATGGATACACCAGAAGAGTTTGATGAGAGCAAATTATTAACTGTGGATGCATCCGATGCAGAAAGTGACATGCTTAGATTGTCAGATGGAAGCAAAAACAACAATAAAGATGATGATGACGAAAGTGATGAAGTCTTGATATTGGATCCATCTAGTGTTGACCAAAAGAAATTTGGTCACAAGAGGAAGAGAGAGTCTGTGTCAGAAATGCTAATTTGGATTAACAGCATTGCTAAAAATCCTTGTGATCCTGCAGTTGGTTCGGTTCCTGAAAAGTCTAAGTGGAAGTCTTGCAGTAGTCAAGAGATCTGGAAGCAGGCTTTGTTGTTTCGAGAAGCAGTCTTTCTAAAGAAAGATTTTGAGACAGCCAGTGAACAACTTAGTTGGCAGAGTCAGAAAATGCATCCTTCCATGTACGATGATCGCATTGAGGCATTGTACAATTTTAGAAAGAGGTTGAAGTGTGAAGAGAAGTCTTTATTGGGAAAATCTACATCCGATGGAGTCTCCTCGACTTCATCGAAAACAAAAACAAAAGCTCGTGGACATTTGGAGAGAACCTCAAGTTCTCGATCTGAAGATGTTGTCGATAAGAAGTTACTTGACTCCTGTAGTCTTGATAAATATGCCCGGGTGCACATCCCTGTGGGGCCAAATCATCAAGCTGAAGTGCCAGAATGGACTGGCACAACTTTTGAAAGTGATTCTAAGTGGTTGGGGACCCAAATATGGCCTCCAAAATTTGTAAATTCAAAATGGTGTCTTATTGAAAGGGACCCTATTGGAAAAGGAAGACAAGATTCATGTGGCTGCCCAGTACAAGGTTCTGTTGAGTGTGTCCGGTTTCATGTTGGTGAGAAAAGGTCTAAAGTTAAGATAGAGCTGGGGGAGGCTTTTTTCCAATGGAGATTAGACATGGTAGGTGAAGAAGTTAGTAGTTCTTGGACAGATGAGGATGAGAAGAAGTTCAGAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTTTTGGGATCATCTCTTTAAAACATTTCCTAAGAAGAGCAGAGAAGATTTGGTCTGCTACTATTTCAATGTCTTTCTTCTGCAGCAGAGAGCATATCAGAACAGGCATACTCCAGATAACATTGATAGTGATGATGATGAATCAGAGTTCACACCATTGAGGAAAGTGTTTGGACATCAAACACCAAAATCACGCAACCTCACCTTGTTATCACCCAAAAAATCCACTGGCAAAAGGTCAAATGGCAAGTGA 1956 0.4131 MMGNGESLDLYKLFMVVKKKGGYDAVCKNRLWDLVGEEYGLGVKVGSDVEHVYSKHLSALETCLKNVAGGKFAEYGLEGDRVKFQKHLMEAHTESMLDDSGEEEVGDEHERRDCGCPDGRKLSGSNRVKCVKPESNGAEQESAYKYIDRSKSCGSNSVKDKNTNSNGNEYDNVCDYLEGRKLCGTNRMNGVNPDFNEAKKVRRPELVDLDMLEDHDKGEPIVVKFCGFNTEMDTPEEFDESKLLTVDASDAESDMLRLSDGSKNNNKDDDDESDEVLILDPSSVDQKKFGHKRKRESVSEMLIWINSIAKNPCDPAVGSVPEKSKWKSCSSQEIWKQALLFREAVFLKKDFETASEQLSWQSQKMHPSMYDDRIEALYNFRKRLKCEEKSLLGKSTSDGVSSTSSKTKTKARGHLERTSSSRSEDVVDKKLLDSCSLDKYARVHIPVGPNHQAEVPEWTGTTFESDSKWLGTQIWPPKFVNSKWCLIERDPIGKGRQDSCGCPVQGSVECVRFHVGEKRSKVKIELGEAFFQWRLDMVGEEVSSSWTDEDEKKFRDVVKSNPASLDKCFWDHLFKTFPKKSREDLVCYYFNVFLLQQRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTPKSRNLTLLSPKKSTGKRSNGK 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00595 651 ProSiteProfiles ELM2 domain profile. 443 567 IPR000949 -
Vian2g00595 651 SMART bright_3 2 66 IPR001606 GO:0003677
Vian2g00595 651 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Vian2g00595 651 SMART ELM2_2 445 497 IPR000949 -
Vian2g00595 651 MobiDBLite consensus disorder prediction 629 651 - -
Vian2g00595 651 Pfam ARID/BRIGHT DNA binding domain 4 61 IPR001606 GO:0003677
Vian2g00595 651 CDD ARID 4 61 - -
Vian2g00595 651 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 644 - -
Vian2g00595 651 MobiDBLite consensus disorder prediction 256 279 - -
Vian2g00595 651 MobiDBLite consensus disorder prediction 393 422 - -
Vian2g00595 651 MobiDBLite consensus disorder prediction 94 113 - -
Vian2g00595 651 MobiDBLite consensus disorder prediction 604 651 - -
Vian2g00595 651 Gene3D - 1 70 IPR036431 GO:0003677
Vian2g00595 651 MobiDBLite consensus disorder prediction 256 270 - -
Vian2g00595 651 MobiDBLite consensus disorder prediction 605 621 - -
Vian2g00595 651 SUPERFAMILY ARID-like 4 72 IPR036431 GO:0003677
Vian2g00595 651 MobiDBLite consensus disorder prediction 394 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00595 Vian-Chr2 7288113 7291565 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vian2g00595 ARID 3.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00595 - - vun:114182925 1182.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00595 2 7288113 7291565 Vian2g00595 2 7288113 7291565 ECH
Vian2g00595 2 7288113 7291565 Vian9g00654 9 8114992 8118528 PCT