Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00590 ATGGGATTTCCGGTAGGGTATCCGGAAGTGCTGGTCCCCAAGCTCTTCCTCCACGCGCTCTCGCTCCTCGCGTGGCTCCGCTCGCTCGTCGCCGCGCTCTTCCACCTCCTCCGCCTCTCCGACCTCCTCGACACCGACGCTGCCGCGATCGCTTGGCCGCCGGAGTCTCCTCCGCCGCGCGCTCCGACTCTCTCCGCGCTCCTCATCCGCGAGTTTCTCCCCGTGGCAGCGTTCCGTGACCTGGACGGCGCTGGCGAGTCCCCTCCGTCCCCGTCGGGGTGCGCGGTGTGCCTGAGCGAGTTCTGCGCGGAGGAGGAGATCAGATGTATGGCGAACTGCAAACACATGTTCCACCGCGCGTGCGTGGATCGTTGGATCGATCACGATCAGAAGACGTGTCCTCTGTGTAGGACACCATTCGTGCCGGAGCACAAGGTGGAGGAGTATAACCAGCGGCTATGGGCAGCTTCTGGTGTTTCCCAGTTTTATCAAGACGATTACACTCCTACTCTCTGA 516 0.6298 MGFPVGYPEVLVPKLFLHALSLLAWLRSLVAALFHLLRLSDLLDTDAAAIAWPPESPPPRAPTLSALLIREFLPVAAFRDLDGAGESPPSPSGCAVCLSEFCAEEEIRCMANCKHMFHRACVDRWIDHDQKTCPLCRTPFVPEHKVEEYNQRLWAASGVSQFYQDDYTPTL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00590 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 146 IPR013083 -
Vian2g00590 171 SMART ring_2 94 136 IPR001841 -
Vian2g00590 171 PANTHER RING ZINC FINGER PROTEIN-RELATED 26 157 - -
Vian2g00590 171 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Vian2g00590 171 SUPERFAMILY RING/U-box 87 146 - -
Vian2g00590 171 Pfam Ring finger domain 94 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00590 Vian-Chr2 7224491 7225006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00590 1 158 C3H Transcription Factor Family AT1G63840 44.654 1.92e-48 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00590 K16281 - gmx:100813224 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00590 2 7224491 7225006 Vian2g00590 2 7224491 7225006 ECH
Vian2g00590 2 7224491 7225006 Vian9g00644 9 7893549 7894058 PCT