Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00582 ATGGCGATGGGGAACGACTCGGACGAGTCGACTTTGTCAGATGAGGAGTATGACCCGGTGGAGGAGGTGCAGCGAGTCATCGAATCGGTGGTTCAGTTCGGGGACTACCGGAGGACGCAGCGGAGGGAGTGCCACAACCTCGTGCGCCGTTTCAAGCTCATGTTGCCGATCTTGGAAGAGCTTCGCGACATCCCACAACCCTTTACGAAAAACGGCGTCGCTTGGTTAGTCAAATTCAAGGAGGCGCTATTGTTCGCCAAGGATTTGTTGCAACTGTGCAACCAAGGAAGCAAGATTTACCTCTCTTTGGAGACAGAGACGATAATGGCCACGTTTCAGAAAGTGTATGAAAAATTAAGCCAAGCGTTTGGTGGCGTGCCTTGTGAGGAAATGGGCATCTCGGATGAAGTCAAAGAGCAGCTTGAGCTAATGCACGTGCAACTGAAGCGAGCGAGGAGAAGAACTGATACACAGGACATAGAACTTGCGATGGATATGATGGTAGTGTTCTCTGACGAGGATGATAGAAATTCTGACAGTGCTATAATCGAGAGGCTGGCAAAAAAGTTGGAGCTTCATAGTGTTGAGGAACTTAACATAGAAACAATGGCCATCAGGCAACTTGCAGAAGAAAGAAAAGGGCAACAGATTGAAAGTACTACGCGAATAATCAATCTTCTCAACAAATTCAAACGCGTTGCAGGCATGCCAGAAACCACTGTCCTTGACGATCCTGTCGCACCCAAGATGCTAGAGAGGTCCACCTCTTTGGTCATCCCACACGAGTTTCTCTGCCCAATAACACTAGAAATCATGACAGATCCTGTTATCATAGCAAGTGGACAGGAAAGCATAGAGAAGTGGTTCGAAGCCAACCACAACACATGCCCAAAGACTAGGCAACCTTTGCAGCACATGTCATTGGCACCAAACTGCGCATTGAGAAATTTGATCGAAGAATGGTGTGTGAACAACAACTTCAAGCTTCCCAAAAAGTACGATTCAGCAAAAGAAAGTTGTCCAGGCAAAGAGGAAATTCCTTGTTTGGTTGACGGCTTAGGGTCCATTCATTTAGAAGAGCAGAGAAAAGCAGTGGAGAAGATACGTATGTTGTCAAAGGAGAATGCTGAGAACAGGGTGTTGGTTGCTGAATGTGGAGGAATACCACCACTAGTGCAACTACTGTCGTATCCAGATTCAAAAATACAAGAGCATGCTGTGACAGCACTTTTGAACCTATCAATTGATGAGGGTAACAAGAGACTTATATCATCAGAAGGTGCGATTCCAGCCATCATAGAAGTTTTGGAGAATGGAAGTTGTGTGGCTAAGGAAAACTCAGCAGCAACTTTATTTAGCTTGTCAATGCTTGATGAGATTAAAGAGATTGTTGGTCAATCAAATGGGTTGCCACCTTTGGTGAATTTGTTGAAGAATGGAACAGTTAGAGGGAAGAAAGATGCTATCACAGCTCTTTTCAACTTATCACTGAACCAAGCAAACAAAGGTAGGGCCATTAGGGCTGGCATTGTAGCACCTTTGGTTCAGTTGCTGAAGGACGTAAACTTAGGGTTGATTGATGAGGCTCTCTCCATTCTGTTACTCCTTGTCTCAAATTCAGAAGGAAGACAAGAGATTGGACAACTTAGTTTCATCGAAATTCTTGTTCAGTTCATGCGAGAAGGAAGTCCGAAGAACAAGGAATGTGCAGCCTCAGTTCTTCTTGAGTTGTGCTTAAATAACTCATCCTTCATATTGGCAGCACTTCAGTTTGGAGTGTATGAACATTTGATAGAAATCAAACAAAATGGAACAAATAGAGCACAGAGGAAAGCAATGGCAATCTTAGAACTCATAACCAAGAGCGAGCAGATTTAA 1878 0.4452 MAMGNDSDESTLSDEEYDPVEEVQRVIESVVQFGDYRRTQRRECHNLVRRFKLMLPILEELRDIPQPFTKNGVAWLVKFKEALLFAKDLLQLCNQGSKIYLSLETETIMATFQKVYEKLSQAFGGVPCEEMGISDEVKEQLELMHVQLKRARRRTDTQDIELAMDMMVVFSDEDDRNSDSAIIERLAKKLELHSVEELNIETMAIRQLAEERKGQQIESTTRIINLLNKFKRVAGMPETTVLDDPVAPKMLERSTSLVIPHEFLCPITLEIMTDPVIIASGQESIEKWFEANHNTCPKTRQPLQHMSLAPNCALRNLIEEWCVNNNFKLPKKYDSAKESCPGKEEIPCLVDGLGSIHLEEQRKAVEKIRMLSKENAENRVLVAECGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKRLISSEGAIPAIIEVLENGSCVAKENSAATLFSLSMLDEIKEIVGQSNGLPPLVNLLKNGTVRGKKDAITALFNLSLNQANKGRAIRAGIVAPLVQLLKDVNLGLIDEALSILLLLVSNSEGRQEIGQLSFIEILVQFMREGSPKNKECAASVLLELCLNNSSFILAALQFGVYEHLIEIKQNGTNRAQRKAMAILELITKSEQI 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00582 625 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Vian2g00582 625 SUPERFAMILY ARM repeat 334 620 IPR016024 -
Vian2g00582 625 Gene3D - 331 625 IPR011989 -
Vian2g00582 625 FunFam RING-type E3 ubiquitin transferase 330 625 - -
Vian2g00582 625 SMART Ubox_2 262 321 IPR003613 GO:0004842|GO:0016567
Vian2g00582 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 329 IPR013083 -
Vian2g00582 625 CDD RING-Ubox_PUB 260 308 IPR045210 -
Vian2g00582 625 Gene3D - 15 127 IPR036537 GO:0007166
Vian2g00582 625 PANTHER U BOX DOMAIN-CONTAINING 41 619 - -
Vian2g00582 625 FunFam RING-type E3 ubiquitin transferase 16 129 - -
Vian2g00582 625 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Vian2g00582 625 Pfam Armadillo/beta-catenin-like repeat 459 496 IPR000225 GO:0005515
Vian2g00582 625 SMART arm_5 539 579 IPR000225 GO:0005515
Vian2g00582 625 SMART arm_5 498 538 IPR000225 GO:0005515
Vian2g00582 625 SMART arm_5 416 456 IPR000225 GO:0005515
Vian2g00582 625 SMART arm_5 457 497 IPR000225 GO:0005515
Vian2g00582 625 SMART arm_5 375 415 IPR000225 GO:0005515
Vian2g00582 625 SUPERFAMILY RING/U-box 257 330 - -
Vian2g00582 625 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 510 IPR000225 GO:0005515
Vian2g00582 625 Coils Coil 134 154 - -
Vian2g00582 625 ProSiteProfiles U-box domain profile. 258 328 IPR003613 GO:0004842|GO:0016567
Vian2g00582 625 Pfam U-box domain 259 325 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00582 Vian-Chr2 7129584 7132333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00582 20 625 U-box Gene Family AT5G42340 61.967 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00582 - - gmx:100789656 1003.82