Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian2g00567 | ATGGCCGAAGATTGGGATCTACATGCGGTGGTCAGAGGTTGCTCCACCGTCACATCATCCTCTGTGTCGTCTTCTTCTTCCTCCTCCTCTGGTTTTGCCTCTTGTTACTTCCACCCTGAAGGAGTTTCCTCCTCCTCCTCTTCTTCTGGCTTTTCCATCTTCAGAGGTGAACAAGGAAGCCAGGTTCTGTCGCTTTCTGCGTACCCCTTTGAGGCAAGGAGCCCCATTGAGGAGCTGCATGAGCTTTGCAGGCCTTTCTTCTGCAAATCTCAGCCTCTCTCGTTGCAAGCCTCTTCCCCCTTGTCCTCACTCTCTTCCTATTCTTCTGCGCCTCCCAAAACGGTTTCATCTCAAGAGAAGCAACAACAACAGCGAAACAAGCAGCCGCTCTCTGTCACCACCCCACGATCTAAAAGAAGGAAGAACCAGCTTAAGAAAGTTTGTCAAGTGCCTTTTGAAAATCTCTCCTCGGACATATGGGCATGGAGGAAATATGGCCAGAAACCCATAAAGGGGTCTCCTTATCCAAGGGGGTACTACAGATGTAGCAGCTCAAAGGGGTGTTTGGCAAGGAAACAGGTTGAGAGGAACAGATCAGACCCAACCATGTTCATAGTGACTTACACTGCCGAGCACAACCATCCTGCTCCTACTCACAGAAACTCCCTTGCTGGCTCCACACGCCAGAAGCCACTGGCCCCTCAAACTGCCACCACCGAACAAGACTCTGACAAGATCAAGAGCCTCACAAAACCCTCCTCCCCTGCCACCTCAGGGGCAGAGGAAGAGGTTCCAGCACAAGTGGAAAAGTCTGAGAGCAGAGAAGAGAAAGAGGATGTGATGGATGATGAGGAAGAAGATGATTTTGTTTTGTCTGACATGGTGCTAACAGATGATTTCTTTGAGAGCTTGGATGAGCTGAGTCAGCTCACTGCCCCTTCTGTTGTCACAGGAGACTGCTTCAGTGACCCCTTTTCAGCTATGGCAATCCCTTCTTGGGTGGCCAGTGGTGCTGCTACTGCCGGTGGATGCATATGA | 1038 | 0.5077 | MAEDWDLHAVVRGCSTVTSSSVSSSSSSSSGFASCYFHPEGVSSSSSSSGFSIFRGEQGSQVLSLSAYPFEARSPIEELHELCRPFFCKSQPLSLQASSPLSSLSSYSSAPPKTVSSQEKQQQQRNKQPLSVTTPRSKRRKNQLKKVCQVPFENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLAPQTATTEQDSDKIKSLTKPSSPATSGAEEEVPAQVEKSESREEKEDVMDDEEEDDFVLSDMVLTDDFFESLDELSQLTAPSVVTGDCFSDPFSAMAIPSWVASGAATAGGCI | 345 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian2g00567 | 345 | ProSiteProfiles | WRKY domain profile. | 151 | 217 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vian2g00567 | 345 | MobiDBLite | consensus disorder prediction | 211 | 286 | - | - | |
Vian2g00567 | 345 | MobiDBLite | consensus disorder prediction | 104 | 137 | - | - | |
Vian2g00567 | 345 | SMART | WRKY_cls | 156 | 216 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vian2g00567 | 345 | FunFam | WRKY transcription factor 22 | 140 | 210 | - | - | |
Vian2g00567 | 345 | MobiDBLite | consensus disorder prediction | 214 | 257 | - | - | |
Vian2g00567 | 345 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 4 | 310 | IPR044810 | GO:0003700 | |
Vian2g00567 | 345 | MobiDBLite | consensus disorder prediction | 104 | 145 | - | - | |
Vian2g00567 | 345 | SUPERFAMILY | WRKY DNA-binding domain | 154 | 217 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vian2g00567 | 345 | Gene3D | WRKY domain | 140 | 210 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vian2g00567 | 345 | Pfam | WRKY DNA -binding domain | 158 | 215 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian2g00567 | Vian-Chr2 | 6873673 | 6875255 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian2g00567 | 1 | 345 | WRKY Transcription Factor Family | AT4G01250 | 47.443 | 3.20e-84 | 255 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Vian2g00567 | WRKY | 3.3e-25 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian2g00567 | K13425 | - | gmx:100798084 | 544.658 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian2g00567 | 2 | 6873673 | 6875255 | Vian8g00993 | 8 | 26471242 | 26472716 | ECH | |
Vian2g00567 | 2 | 6873673 | 6875255 | Vian3g00672 | 3 | 6802957 | 6804139 | ECH | |
Vian2g00567 | 2 | 6873673 | 6875255 | Vian2g00567 | 2 | 6873673 | 6875255 | ECH | |
Vian9g00621 | 9 | 7537144 | 7543473 | Vian2g00567 | 2 | 6873673 | 6875255 | ECH | |
Vian9g00197 | 9 | 1613103 | 1617973 | Vian2g00567 | 2 | 6873673 | 6875255 | ECH | |
Vian2g00567 | 2 | 6873673 | 6875255 | Vian9g00621 | 9 | 7537144 | 7543473 | PCT |