Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian2g00557 | ATGTCCCCTTCAATTCCCTCTCCTCACATCACCCACCTTGGCCTTGGCTACTCCATCGCCATAGCCCTCGCCTTCCTCTTCCTCCTCTCTACCCTTCTCCTCTCCTCCTATCTCTGCTGCCGCGCCACCCGACACCGCACCCAAACAACCGCCATCACAACCGCCGCCACCAACCCCTCCGACGGCGTTGTTCTGCCGCGTGTCATCTTCGTGGCGGAGGACGACGACGACGACGAGGAGGCCAGCGTTGCGCTGGGGCTCGACCAGAGCGTCATTAATTCCTACCCCAGGTTCCAGTTCGACAGGGACAACGCGCGGAATAGTAACGGGAATAACAACACGTGCTCCATATGTTTGTGCGAGTACAAGGATTCGGAGATGCTCAGGATGATGCCCGAGTGCCGCCATTTCTTCCACCTCTGTTGCCTCGATTCCTGGCTCAGACTCAGAGGCACCTGCCCCGTTTGCCGCAACTCGCCGCTCCCGACGCCGCTCTCCACGCCGCTGCAGGAGGTGGTGCCGCTCTCTCAGTACGCCGCCGATAGAAGGCGAAGTAGGTCTGATGTGAGGGGAATGGGGAAAATTCTTAGGGCTAGTTGGGGTGTTCCCACTTTCCATTGTGATTGGTGCTTTGAGCCGCAATGGAATGCTAATTTTGCTGCTCTGTATTACCCATTTGTATTAGTTTTAGTGATTATTTTGCCTCTGCCTTTGCCTGGATTTGATTCAGAAGAGGAAGATATTGATGCTTTTTAG | 756 | 0.5556 | MSPSIPSPHITHLGLGYSIAIALAFLFLLSTLLLSSYLCCRATRHRTQTTAITTAATNPSDGVVLPRVIFVAEDDDDDEEASVALGLDQSVINSYPRFQFDRDNARNSNGNNNTCSICLCEYKDSEMLRMMPECRHFFHLCCLDSWLRLRGTCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRSRSDVRGMGKILRASWGVPTFHCDWCFEPQWNANFAALYYPFVLVLVIILPLPLPGFDSEEEDIDAF | 251 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian2g00557 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 161 | IPR013083 | - | |
Vian2g00557 | 251 | Pfam | Ring finger domain | 113 | 157 | IPR001841 | - | |
Vian2g00557 | 251 | PANTHER | RING-H2 FINGER PROTEIN ATL67 | 7 | 185 | IPR044289 | GO:0016567|GO:0016740 | |
Vian2g00557 | 251 | SUPERFAMILY | RING/U-box | 114 | 162 | - | - | |
Vian2g00557 | 251 | ProSiteProfiles | Zinc finger RING-type profile. | 115 | 157 | IPR001841 | - | |
Vian2g00557 | 251 | SMART | ring_2 | 115 | 156 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian2g00557 | Vian-Chr2 | 6760802 | 6762451 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian2g00557 | 7 | 176 | C3H Transcription Factor Family | AT5G07040 | 44.118 | 2.98e-40 | 134 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian2g00557 | - | - | gmx:100793332 | 227.639 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian2g00557 | 2 | 6760802 | 6762451 | Vian2g00557 | 2 | 6760802 | 6762451 | ECH |