Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00557 ATGTCCCCTTCAATTCCCTCTCCTCACATCACCCACCTTGGCCTTGGCTACTCCATCGCCATAGCCCTCGCCTTCCTCTTCCTCCTCTCTACCCTTCTCCTCTCCTCCTATCTCTGCTGCCGCGCCACCCGACACCGCACCCAAACAACCGCCATCACAACCGCCGCCACCAACCCCTCCGACGGCGTTGTTCTGCCGCGTGTCATCTTCGTGGCGGAGGACGACGACGACGACGAGGAGGCCAGCGTTGCGCTGGGGCTCGACCAGAGCGTCATTAATTCCTACCCCAGGTTCCAGTTCGACAGGGACAACGCGCGGAATAGTAACGGGAATAACAACACGTGCTCCATATGTTTGTGCGAGTACAAGGATTCGGAGATGCTCAGGATGATGCCCGAGTGCCGCCATTTCTTCCACCTCTGTTGCCTCGATTCCTGGCTCAGACTCAGAGGCACCTGCCCCGTTTGCCGCAACTCGCCGCTCCCGACGCCGCTCTCCACGCCGCTGCAGGAGGTGGTGCCGCTCTCTCAGTACGCCGCCGATAGAAGGCGAAGTAGGTCTGATGTGAGGGGAATGGGGAAAATTCTTAGGGCTAGTTGGGGTGTTCCCACTTTCCATTGTGATTGGTGCTTTGAGCCGCAATGGAATGCTAATTTTGCTGCTCTGTATTACCCATTTGTATTAGTTTTAGTGATTATTTTGCCTCTGCCTTTGCCTGGATTTGATTCAGAAGAGGAAGATATTGATGCTTTTTAG 756 0.5556 MSPSIPSPHITHLGLGYSIAIALAFLFLLSTLLLSSYLCCRATRHRTQTTAITTAATNPSDGVVLPRVIFVAEDDDDDEEASVALGLDQSVINSYPRFQFDRDNARNSNGNNNTCSICLCEYKDSEMLRMMPECRHFFHLCCLDSWLRLRGTCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRSRSDVRGMGKILRASWGVPTFHCDWCFEPQWNANFAALYYPFVLVLVIILPLPLPGFDSEEEDIDAF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00557 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 161 IPR013083 -
Vian2g00557 251 Pfam Ring finger domain 113 157 IPR001841 -
Vian2g00557 251 PANTHER RING-H2 FINGER PROTEIN ATL67 7 185 IPR044289 GO:0016567|GO:0016740
Vian2g00557 251 SUPERFAMILY RING/U-box 114 162 - -
Vian2g00557 251 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Vian2g00557 251 SMART ring_2 115 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00557 Vian-Chr2 6760802 6762451 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00557 7 176 C3H Transcription Factor Family AT5G07040 44.118 2.98e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00557 - - gmx:100793332 227.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00557 2 6760802 6762451 Vian2g00557 2 6760802 6762451 ECH