Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00554 ATGTCAGTGTCTCCTTCTCCCTCCGTCTCCTTCTCCTACGGGCCACCCTTGAACACCAACAACAATGGACTAGACATATTCACCAAGGTCTTCCTGTTGCTCATCTTTTTCACTCTCTTCGTTCGTGTCTGTTACGTGTACATGAACATGCGACGAGAACAAAACGGCAACGACAACGTAAGCAACAGCATCGATTCCATGATCCATAATGATCAAAATGATAACCTCACCGGGCTACCCTATGACGTCATAAAGTCCTACCGCACTTTCCCTTACAGCAAAACCGATAGTGTTGTGGGAACAACGTGCGACCATGACACCACGTGCGCCATATGTATTGAGGATTACGAGGAATCGGAGATGCTGAGGGTGTTGCCGCAATGCCGCCACTACTTTCACCGAGACTGCGTCGACGCATGGCTGAAGGTTAATGCCACGTGTCCCGTTTGTAGGCACTCGCTCATGAAAACTGGAAGCAATAATAATATTAACCATAACAGTGTCATTAACAATGCCTTAGAACGTGTCTAA 531 0.4727 MSVSPSPSVSFSYGPPLNTNNNGLDIFTKVFLLLIFFTLFVRVCYVYMNMRREQNGNDNVSNSIDSMIHNDQNDNLTGLPYDVIKSYRTFPYSKTDSVVGTTCDHDTTCAICIEDYEESEMLRVLPQCRHYFHRDCVDAWLKVNATCPVCRHSLMKTGSNNNINHNSVINNALERV 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00554 176 PANTHER RING-H2 FINGER PROTEIN ATL67 18 158 IPR044289 GO:0016567|GO:0016740
Vian2g00554 176 Pfam Ring finger domain 108 151 IPR001841 -
Vian2g00554 176 CDD RING-H2_PA-TM-RING 108 151 - -
Vian2g00554 176 SUPERFAMILY RING/U-box 108 160 - -
Vian2g00554 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 157 IPR013083 -
Vian2g00554 176 SMART ring_2 109 150 IPR001841 -
Vian2g00554 176 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00554 Vian-Chr2 6734781 6735311 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00554 15 153 C3H Transcription Factor Family AT5G07040 32.143 1.47e-19 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00554 - - vun:114182932 299.671