Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00528 ATGGGGTTGATCGTGGAGGTCGAGAACGGCGACGACAACGACGCCGTTCTGGTTCCGCCCCCTAACTTCGCCATGGTCGAGGACTGCATTTTCCGATCCAGCTTTCCTACCTCCTCCAATTTCCCCTTTCTCCAAACCCTAAACCTTCGTTCCATCATATACCTGTGCCCCGAGCCTTATCCTGAGGAAAATCTAGAGTTCCTTCGGTCGCAGAATATTCGTCTCTTTCAATTTGCAATTGAGGGGAAAACGGATATTTCTACCCCTATTCTCAAGGATTCTATCATGGATGCACTGAAAGTTTTGATTGATGTGAGAAATCACCCTGTTTTGATCCATTGCAAGCGAGGAAAGCATAGAACTGGTTGCCTTGTTGGTTGCTTGCGAAAATTACAGAATTGGTGTTTATCTTCTGTATTTGAGGAGTACCAACGATTTGCTGGTGCTAAATCCAGGACAATGGACTTAACATTTATAGAAATGTTTGACATTCTAAGCCTGAGCCAGTGCCTTTACAGCATAATCTACCAGTACCATGGATATGGTTCGAAAAAGCGTCGGTTGTTGTACAAAGAAGAGAATTTACAGAAGCCCCGATTGACATCATTTTAG 612 0.4428 MGLIVEVENGDDNDAVLVPPPNFAMVEDCIFRSSFPTSSNFPFLQTLNLRSIIYLCPEPYPEENLEFLRSQNIRLFQFAIEGKTDISTPILKDSIMDALKVLIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYQRFAGAKSRTMDLTFIEMFDILSLSQCLYSIIYQYHGYGSKKRRLLYKEENLQKPRLTSF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00528 203 PANTHER TYROSINE-PROTEIN PHOSPHATASE 14 173 - -
Vian2g00528 203 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 164 IPR029021 -
Vian2g00528 203 Gene3D Protein tyrosine phosphatase superfamily 16 166 IPR029021 -
Vian2g00528 203 FunFam probable tyrosine-protein phosphatase At1g05000 16 166 - -
Vian2g00528 203 CDD PFA-DSP_Siw14 17 163 - -
Vian2g00528 203 PRINTS Plant and fungal dual specificity phosphatase signature 17 34 IPR020428 GO:0016791
Vian2g00528 203 PRINTS Plant and fungal dual specificity phosphatase signature 90 104 IPR020428 GO:0016791
Vian2g00528 203 PRINTS Plant and fungal dual specificity phosphatase signature 54 67 IPR020428 GO:0016791
Vian2g00528 203 PRINTS Plant and fungal dual specificity phosphatase signature 73 87 IPR020428 GO:0016791
Vian2g00528 203 ProSitePatterns Tyrosine specific protein phosphatases active site. 112 122 IPR016130 GO:0016311|GO:0016791
Vian2g00528 203 ProSiteProfiles Dual specificity protein phosphatase domain profile. 22 173 IPR020422 GO:0006470|GO:0008138
Vian2g00528 203 Pfam Tyrosine phosphatase family 17 165 IPR004861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00528 Vian-Chr2 6422774 6424642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00528 1 199 Protein tyrosine phosphatase (PTP) family AT3G02800 70.352 8.02e-105 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00528 K18045 - gmx:100787713 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00528 2 6422774 6424642 Vian2g00528 2 6422774 6424642 ECH