Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00521 ATGGTCATGGAAAATCAAAACTTGCTACCACTCTTCATCATCCTTTTCTTGGCTCATTGGATCCATCTTCAAGCTGCTCCTCCTCACTCTCTCGTCACACAACTCCCTGGCTTCAGCTCCAGTTTCCCATCCAACCACTATTCAGGATATATAAGTATTGATGGAGATTATGAGAGTGGGAAGAACCTGTTCTACTACTTGGTGAGCTCAGAAAGAAGTGCAGAGAAGGACCCAGTGGTGCTATGGCTGAATGGTGGACCTGGGTGTTCAAGCTTCGATGGCTTCGTTTATGAGCATGGACCATTCAACTTTGAGGCTGCAAATTCAAAAGAGAATCTACCCACTTTGCATATCAATCCATACAGCTGGTCAAAGGTTGGTTTGGTTAAGAACGTCACTCTGCAAATCAATAATGCTGCTATATTAGTTTCTAACATTATATATTTGGATTCTCCTGCTGGTGTTGGACTCTCTTATTCCAAGAACACCAGCAAATATGCCACTGGGGACCTGCAAACTGCGTCTGATACCCATCTTTTTCTCTTAAAGTGGTTTCAGCAATTCCCAGAATTTCAGGCTAATCCATTTTATATTGCTGGAGAGTCTTACGCTGGAGTTTATGTGCCTACTCTGGCTTTTGAAGTTGCTAAAGGAATCCAGAGTGGTACAAAGCCCGTGATCAATTTTAAGGGTTACATGGTTGGAAATGGTGTCACGGACGAAAGATTTGATGGCAATGCTCTCATCCCATTTGTGCATGGGATGGGCCTCATATCAGACAGTATCTACGAGGATTTACAAGCTACATGCAAAGGAAACTACTACGATGCTTACTCTTTGGACGAAAATGATCCGTGTTATAAGAGCATTGTAAAAGTTGATAGGGCCATTGATGGGCTTAACGTGTACAATATACTCGAGCCATGCTACCACTTCCCTGACACAACCAAAGAAAATGGAAGCTTACCAACAAGTTTCAAGCAATTAGGAGTTACTGAGAAGCCTCTCCCAGTGAGGAAGAGAATGTTTGGAAGAGCATGGCCTTTTCGAGCACCAGTCAAACCTGGTCTTGTCACATTATGGCCTGAATTGGCTGAAAAGACTCAAACGAGGCATGTCGCTTGTGTTCAGAATGATGAAGTAGCAAGCTCATGGCTGAACAACGATGCTGTCAGAAAAGCCATTCATGCTGGATCGGAAAGTGTGGCAGGTGCATGGGAGTTATGTACAGATAGGATAGAGTACGATCACAATGCTGGAAGCATGATTCCCTACCACAAGAACCTAACCAAGATGGGCTACAAGGCACTTATTTTCAGTGGTGACCATGATATGTGTGTACCATTTACTGGAAGTGAGGCTTGGACTCGATCTCTGGGATATAAGATCGTGGATGAATGGAGGCCATGGAACTCAAACGACCAAGTTGCTGGGTACTTGCAAGAATACGAGAACAATCTCACATTCCTAACAATCAAGGGAGCTGGGCACACCGTGCCGGAATATAAGCCACGGGAAGCGTTGGAATTCTTCAGTCATTGGTTGGAAGGAAAGACAATATAA 1563 0.4402 MVMENQNLLPLFIILFLAHWIHLQAAPPHSLVTQLPGFSSSFPSNHYSGYISIDGDYESGKNLFYYLVSSERSAEKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAANSKENLPTLHINPYSWSKVGLVKNVTLQINNAAILVSNIIYLDSPAGVGLSYSKNTSKYATGDLQTASDTHLFLLKWFQQFPEFQANPFYIAGESYAGVYVPTLAFEVAKGIQSGTKPVINFKGYMVGNGVTDERFDGNALIPFVHGMGLISDSIYEDLQATCKGNYYDAYSLDENDPCYKSIVKVDRAIDGLNVYNILEPCYHFPDTTKENGSLPTSFKQLGVTEKPLPVRKRMFGRAWPFRAPVKPGLVTLWPELAEKTQTRHVACVQNDEVASSWLNNDAVRKAIHAGSESVAGAWELCTDRIEYDHNAGSMIPYHKNLTKMGYKALIFSGDHDMCVPFTGSEAWTRSLGYKIVDEWRPWNSNDQVAGYLQEYENNLTFLTIKGAGHTVPEYKPREALEFFSHWLEGKTI 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00521 520 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 504 IPR001563 GO:0004185|GO:0006508
Vian2g00521 520 Pfam Serine carboxypeptidase 36 517 IPR001563 GO:0004185|GO:0006508
Vian2g00521 520 FunFam Carboxypeptidase 422 517 - -
Vian2g00521 520 Gene3D - 372 519 - -
Vian2g00521 520 FunFam Carboxypeptidase 374 519 - -
Vian2g00521 520 Gene3D alpha/beta hydrolase 25 340 IPR029058 -
Vian2g00521 520 SUPERFAMILY alpha/beta-Hydrolases 32 518 IPR029058 -
Vian2g00521 520 ProSitePatterns Serine carboxypeptidases, serine active site. 198 205 IPR018202 GO:0004185
Vian2g00521 520 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185|GO:0006508
Vian2g00521 520 PRINTS Carboxypeptidase C serine protease (S10) family signature 487 500 IPR001563 GO:0004185|GO:0006508
Vian2g00521 520 PRINTS Carboxypeptidase C serine protease (S10) family signature 184 209 IPR001563 GO:0004185|GO:0006508
Vian2g00521 520 FunFam Carboxypeptidase 25 329 - -
Vian2g00521 520 ProSitePatterns Serine carboxypeptidases, histidine active site. 487 504 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00521 Vian-Chr2 6284740 6289378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00521 381 520 Calmodulin-binding Proteins AT2G22960 48.571 1.40e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00521 K16296 - gmx:100790895 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00521 2 6284740 6289378 Vian2g00521 2 6284740 6289378 ECH
Vian2g00521 2 6284740 6289378 Vian9g00607 9 7245880 7247759 PCT