Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00506 ATGGGGTCTATGAACTTGTTGGGGTTTTCTCTCTCTCCTCAAGAACACCCTTCTAGTCAAGATCACTCTCAAACACCACCTTCCCGTTTTGGCTTCAACCCTGCTGGAATCTCAAGCACTGATGTTGCAGGAAACTGTTTTGATCTCACTTCTGACTCAACTCCTCATCTACTCAATCTTCCTTCTTATGGCATATATGAAGCATTTCACAGAAACAATGACATTCACAACACTCCTCAAGATTGGAAAGAGAACTACAACAGTCAGAACTTGCTGTTAGGAACTTCATGCAGTGACCAAAACATGAACAACAATCAACATCAACAACAACAGCAACCAAAGCTTGAAAACTTTCTGGGAGGACATTCTTTTGGAGAACATGACCAAACCTACGGCGGTAACTCAGCCTCAACAGATTACATGTTTCCGAGTCAGCCAGTGGCCACCAGTGGCGGCAGTAGCACAGGCAATAGTAACTCCATAGGGTTATCCATGATAAAGACATGGCTGAGGAACCAACCGCCACCGTCAGAAAACAACAACAATGAAAGTGGTGGGAACAGTGGAAGCAGTGTGCAGACTCTCTCACTTTCTATGAGTACTGGTTCACAATCCAACACTTCACTTCCTGTTCTCTCTGCAAATGTGGAAAATGGAGAGAGTTCTTCAGATAACAAACAACCACCAACCACTGCTGCACTTGATACCATCCCAACAGGAGCCACTGAATCTGCACCCAGAAAGTCCATTGACACGTTTGGACAAAGAACTTCTATATACCGTGGTGTAACAAGGCATAGGTGGACTGGGAGATACGAGGCTCATCTGTGGGATAATAGCTGCAGAAGAGAGGGACAAACTCGCAAAGGAAGACAAGGAGGCTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCACTAAAATACTGGGGAACAACCACAACAACAAATTTTCCAATTAGCCACTATGAGAAAGAGGTGGAAGAAATGAAGCACATGACCAGGCAAGAGTACGTTGCGTCATTGAGAAGATGGCAAGCAAGGATTGGGAGAGTTGCAGGCAACAAGGATCTTTACTTGGGAACATTCAGCACTCAAGAAGAAGCAGCAGAGGCTTATGATGTTGCGGCCATAAAATTCCGAGGACTGAGTGCTGTTACAAACTTCGACATGAGCAGATACGATGTGAAGAGCATACTTGAGAGCACTACCTTGCCGATTGGTGGTGCCGCCAAGCGTTTGAAGGACATGGAACAGGTGGAACTGAACGTGGAAGCTCATAGAACAGACCAAGAGGATCATAGCAGCATCTTGAACTCTCACCTTACTCAAGGTATCAGTAACAACTATGCAGGAGGAACAGCAACAGCTCATCATAACTGGCACAATGGTCTTTCATTCCACCAACCTCAGCCTTGCACCACCATGCACTACCCTTATGGACAGAGACTATGGTGCAAGCAAGAACAGCACGACAATTCTGATACCTCTCATCCTTTGTCTTATCCTGAGATTCATCAACTACAGCTAGGGAATAACGGCACACACAACTTTTTCCACGCAAATTCCGGCTTGCACCCTATCATGAACATGGATTCTGCTTCCATTGACAATAGCTCTTCGTCTAACTCGGTGGTTTATGATGGTTATGGAGCTGGTGGGGGCTATCTGATACCTATTGGGACTGGTACTGTTGTTGCAAGTGACGGTGATCATAGTAATATAAGAGGAAGTAATGGTTTTGGTGATAATGAGATGAAGGTACTTGGTTATGAAGGTCTTTATGGATCGAATGATGCTTATCATGCACATGCAAGGAACTTGTATTATCTTTCCCAACAGCAATCAGCTTCTGTAGATGTAGTGAAGGGTAGTGCATACGATCAAGGCTCTGCATGCAACACTTGGGTTCCAACTGCAATTCCAACTCTTGCACCTAGGTCTACCAGCATGACTCTCTGCCATGGTGTTCCACCCTTCTCGTTATTGCATGAATAG 2007 0.4504 MGSMNLLGFSLSPQEHPSSQDHSQTPPSRFGFNPAGISSTDVAGNCFDLTSDSTPHLLNLPSYGIYEAFHRNNDIHNTPQDWKENYNSQNLLLGTSCSDQNMNNNQHQQQQQPKLENFLGGHSFGEHDQTYGGNSASTDYMFPSQPVATSGGSSTGNSNSIGLSMIKTWLRNQPPPSENNNNESGGNSGSSVQTLSLSMSTGSQSNTSLPVLSANVENGESSSDNKQPPTTAALDTIPTGATESAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESTTLPIGGAAKRLKDMEQVELNVEAHRTDQEDHSSILNSHLTQGISNNYAGGTATAHHNWHNGLSFHQPQPCTTMHYPYGQRLWCKQEQHDNSDTSHPLSYPEIHQLQLGNNGTHNFFHANSGLHPIMNMDSASIDNSSSSNSVVYDGYGAGGGYLIPIGTGTVVASDGDHSNIRGSNGFGDNEMKVLGYEGLYGSNDAYHAHARNLYYLSQQQSASVDVVKGSAYDQGSACNTWVPTAIPTLAPRSTSMTLCHGVPPFSLLHE 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00506 668 FunFam AP2-like ethylene-responsive transcription factor ANT 258 324 - -
Vian2g00506 668 MobiDBLite consensus disorder prediction 118 250 - -
Vian2g00506 668 ProSiteProfiles AP2/ERF domain profile. 332 393 IPR001471 GO:0003700|GO:0006355
Vian2g00506 668 SUPERFAMILY DNA-binding domain 258 324 IPR016177 GO:0003677
Vian2g00506 668 CDD AP2 347 395 IPR001471 GO:0003700|GO:0006355
Vian2g00506 668 PRINTS Ethylene responsive element binding protein signature 260 271 IPR001471 GO:0003700|GO:0006355
Vian2g00506 668 PRINTS Ethylene responsive element binding protein signature 375 395 IPR001471 GO:0003700|GO:0006355
Vian2g00506 668 ProSiteProfiles AP2/ERF domain profile. 259 322 IPR001471 GO:0003700|GO:0006355
Vian2g00506 668 Pfam AP2 domain 259 314 IPR001471 GO:0003700|GO:0006355
Vian2g00506 668 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 105 481 - -
Vian2g00506 668 MobiDBLite consensus disorder prediction 128 250 - -
Vian2g00506 668 SUPERFAMILY DNA-binding domain 346 395 IPR016177 GO:0003677
Vian2g00506 668 CDD AP2 258 324 IPR001471 GO:0003700|GO:0006355
Vian2g00506 668 Gene3D AP2/ERF domain 259 324 IPR036955 GO:0003700|GO:0006355
Vian2g00506 668 Gene3D AP2/ERF domain 338 395 IPR036955 GO:0003700|GO:0006355
Vian2g00506 668 SMART rav1_2 347 399 IPR001471 GO:0003700|GO:0006355
Vian2g00506 668 SMART rav1_2 259 328 IPR001471 GO:0003700|GO:0006355
Vian2g00506 668 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00506 Vian-Chr2 6095565 6099471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00506 113 420 AP2-EREBP Transcription Factor Family AT5G17430 57.186 1.39e-110 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vian2g00506 AP2 3.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00506 K09285 - gmx:100797584 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00506 2 6095565 6099471 Vian2g00506 2 6095565 6099471 ECH