Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00495 ATGGAGGATTCATTGGAGAACTGGATTTCCGATCTGGAAATGGAAGAGTATGATGCATTTGATGAGCAACAGTTCCTGAGAGAGATCCTTGAGGAGCCACAGAATTTGTCACCTGAAGGAGAGAACAACAGTCCCAGCAACAGCAGCGTGTCATTTGATGAAGCAATTGGTGACACTGTGCAGAAAAGCTACAGTTCCAACTCCATCAAGTCCTTGAAAACATCACCACCACCACCACCACCACCATCATCATCAGCATACCTTCTCTCTTTTGATACTTCAACTGCTGAGCCAATCGCAAAACATAAGCCTTCTACACTGCAGGGATCTTGCAGTAAAAGGGGTGGTGCTGTGGTGAAAGATGGATCTCAGTTTGAACCTGTCATGGCTCAGCCAAGAAAGAGGGCTAGAAGGTCTTGTGAGACACAGCATCACATCATTGCTGAGAGGAAAAGGAGACAGGAACTCACAGGGAGCATCATAGCACTTTCAGCCACCATTCCTGGACTCAAGAGGATGGACAAGGCTTACGTACTTCGTGAAGCAGTGAATTACACTAGACAACTTCAAGAGAGGGTGAAAGAATTGGAAAATAAAAACAGTGAGAAAAGAGTAGTACATCATTCATCAACATTGGTAAGAAAATCTGAAGTTTGCTCAAAGAAAAGCTTGAGCAATAGCAGTGAAAACAACAAAGAATCACTGTTTGAGGTTGAAGCAAGAGTCCTAGATGAGGAAATACTGATTGGAATCCATTGTGAGAAGCAAAAGGACATAGTCTGCAACATACTAGCCTTTCTTGAAAAGCTGCATCTCTCTCCAACCAGTAGCAGTGTATTACCATTTGGCACTTGTACTCTTATAATCCACATCATTGCTCAGATGGATGAGGAATGCAGAATGAACATGGATGAGTTAGTGAAGAATCTGAGAGAATATCTGTTGAATGTGTATGACATGCAGCAAGTTAGTTTGTGA 978 0.4274 MEDSLENWISDLEMEEYDAFDEQQFLREILEEPQNLSPEGENNSPSNSSVSFDEAIGDTVQKSYSSNSIKSLKTSPPPPPPPSSSAYLLSFDTSTAEPIAKHKPSTLQGSCSKRGGAVVKDGSQFEPVMAQPRKRARRSCETQHHIIAERKRRQELTGSIIALSATIPGLKRMDKAYVLREAVNYTRQLQERVKELENKNSEKRVVHHSSTLVRKSEVCSKKSLSNSSENNKESLFEVEARVLDEEILIGIHCEKQKDIVCNILAFLEKLHLSPTSSSVLPFGTCTLIIHIIAQMDEECRMNMDELVKNLREYLLNVYDMQQVSL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00495 325 Coils Coil 179 206 - -
Vian2g00495 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 207 IPR036638 GO:0046983
Vian2g00495 325 SMART finulus 146 195 IPR011598 GO:0046983
Vian2g00495 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Vian2g00495 325 PANTHER BHLH TRANSCRIPTION FACTOR 21 314 - -
Vian2g00495 325 MobiDBLite consensus disorder prediction 27 88 - -
Vian2g00495 325 Gene3D - 131 205 IPR036638 GO:0046983
Vian2g00495 325 MobiDBLite consensus disorder prediction 101 140 - -
Vian2g00495 325 Pfam Helix-loop-helix DNA-binding domain 143 190 IPR011598 GO:0046983
Vian2g00495 325 MobiDBLite consensus disorder prediction 36 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00495 Vian-Chr2 5957270 5959618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00495 8 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.728 1.14e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian2g00495 HLH 6.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00495 - - gmx:100818334 376.326