Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00494 ATGGATGATTTCTTCAACCAAAGCCACACGATCCATTGCAATGAAGAAGAGTCTCCGAAAAACATGATTGTTTTCTCTCACGAAAGCAATATTCCATCTTCTTCCTCCCTCCAAAGTAACTTGAACTCGAAAACTTCATCATTTTCTGCTGGCCATGATTTGTGTTTTGATAACCCTAATTCTGAAGCACATCAGAACCACTCTTCCAAAAGCACGACACAGAGCCAAAACGCGATTCCAAGAGCAAACAGACAACATCACATATTGGCCGAGAGAAAAAGGAGAGAAGAATTGACGAAGAACATAGTAGAACTTTCCGCCATCATTCCTGGGTTAAAAAAGAGAGACAAGGGCAGTGTGGTACGTGAAGCTGTGGATTATGTGAAACGACTTAAAGAACGAGTGAAAGAGCTGGAAAATCAAAAGAGAGAGAATACGAATTCAAGAAGCCTCACCAAGAAACCAACAAGTGTGGAAGAAGAACTTCCAGAAATGAAGATTTCCGTTTCAGACAGGGAAGTGCTTATAGGAATTTTTTGTCACAATCCAAACAATACTTTAGTCAAAGTGTTGTCGTTGCTCGATAATCTTCATCTTTCTACGAGATGTTCTAGTGTGTTGCCATTTGGAACTTCAACATTTAAGGTCACTATAATTGCTAAGATGAATGACGAATATAGCATGACCATCGATGACCTAATAAAAGAAGTTGGAGGACGCTTATTGAGTTTGAAGTCACAGAAGGTGGTAAAGTGA 756 0.3955 MDDFFNQSHTIHCNEEESPKNMIVFSHESNIPSSSSLQSNLNSKTSSFSAGHDLCFDNPNSEAHQNHSSKSTTQSQNAIPRANRQHHILAERKRREELTKNIVELSAIIPGLKKRDKGSVVREAVDYVKRLKERVKELENQKRENTNSRSLTKKPTSVEEELPEMKISVSDREVLIGIFCHNPNNTLVKVLSLLDNLHLSTRCSSVLPFGTSTFKVTIIAKMNDEYSMTIDDLIKEVGGRLLSLKSQKVVK 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00494 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 82 131 IPR011598 GO:0046983
Vian2g00494 251 Gene3D - 69 147 IPR036638 GO:0046983
Vian2g00494 251 PANTHER BHLH TRANSCRIPTION FACTOR 4 237 - -
Vian2g00494 251 SMART finulus 88 137 IPR011598 GO:0046983
Vian2g00494 251 Pfam Helix-loop-helix DNA-binding domain 84 131 IPR011598 GO:0046983
Vian2g00494 251 MobiDBLite consensus disorder prediction 139 159 - -
Vian2g00494 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 146 IPR036638 GO:0046983
Vian2g00494 251 MobiDBLite consensus disorder prediction 52 82 - -
Vian2g00494 251 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00494 Vian-Chr2 5944218 5953076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00494 81 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.899 3.72e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian2g00494 HLH 8.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00494 - - gmx:100808355 234.187