Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00486 ATGCAAGCCTCCTCCTCTTTCTTCTTGTTGTTGCTGTTTTTGTCATGTGCATTGTCTTCTTCACAACTCTTGTTGTTCAACAGAAGGGTCCTCCATGAACCCTTTATTCCTTTGACCTCTCTTCCTCCTTCTGAACCACCAAAACCACCACCTCCTCATCCTTCTCCTTCAACCTCAAAACCAAAACCCAAATACCCTTCATCATCCATCATCCCCACCACCACCATTTCCTCCACACCAGTACCAACAACCACTACAACCACAACACCAACCCCATTAACAACACAATCACCATTTTTCCCGTTATACCCCTCTTCTCCTCCTCCTCCTTCTCCGATCACCTTTGCCTCCTTTCCTGCCAATATCTCCTCCCTCATTCTCCCTCACTCCCCAAAACCCAATTCCTCCCCCAACAAACTTCTTCCCGTCGCTCTCGCAGCCGTTGTCGCTGCCGCACTCACCGTCTCTATCTCTGCCTTCGTCTGTTACCGCCGCCGACGGAACCCTCCCCCCTCCCCAGCAGGCAAAGTTCTCCGTTCCAACACTGACCTCCTCCCGCTCCGCCGCAATGCCGAAACTTCCGTCGAAACACGCAAGCTCCGGCACACGTCCTCCACCAGCTCCGAGTTTCTATACCTCGGCACTGTCGCGAACTCTCACATGATGGAGGACGCCGACGTTGGCGACGGAGACCGGAAAATGGAATCCCCGGAGCTCCGGCCACTTCCGCCGCTCGCGCGACAGGCTTCAGTTCCGCCTCCTCCTCCACCCCGCGACGAGGCGGGTTTCACGACAGCGGAGGAGGACGAAGACGAATTTTACTCGCCGAGAGGTTCGTCGTTGGGAGGCTCCGGTGGAACCGGATCAGTTTCCAGGCGAGTGTTCGCCGTCGATCGAAGCGTGACCTCTAGCTCGTGTTCTTCCTCTTCTTCGGGATCGCCGCAAAGGTCTGTCCTGAACATGCCGCCGCCGGCGAGTTCGGGTTATCGGAACACGCTGCCGAAATCACCGGAAAATTACAACCACCAGCACGTGCATTCTTCTTCTTCGATGTGCTCAACACCAGATAGGGTTTTTGCTGAACGTGATAACGAGGTGTTAAGTGCATGTGTACATGCACATGCAGCACCATCATCATCGCATGAGGGAACGTTGGAGAAAAATGAAAATACATTACCTTCATCTCCACCACCGAGATTATCTGATGCTTCTTCGTCTTCCGCTTTTTCTCTTCCCTCTTCGCCGGAGAAGGTGACACGTCATCATACTTTCGATCAGTCTCCGAGAATGTCGAGTGTTTCCGACGGACTGATGTTACCTGGCTTGTCATCGGTTCCTTTATCACCCGCCCTGCTTTCATCGCCGGAAACCGAAAGAGGAGCTTTCAGTGAATTGAGAACAGATTCTTTTGATGCGCAGAGAAAACACTGGAGCATTCCAGCACTGTCAATGCCAATAACAACACCGTTTGATGAAATTGGAACCGTTCCAGGTCCTCCACCTTTGCCACAGAGGAAGCACTGGGAGATTCCAGGCCATGCTCCGCCACCACCACCGCCGTTGCCACGGCAGCGGAAGCAGTGGGGAGTTCCAGCGCCGGGTCCGTCAACACCGGTTGGTCAACCGGTGTCAAGGCCACCAGAATTGGTGCCTCCTTCGAGGCCTTTTGTGTTGCAAAACCAAGCAACCAATGTTGAGTTGCCGGTGAGTTTGAGGGAAATTGAAGAGACTGGTAAACCAAAACTGAAGGCCCTGCATTGGGACAAAGTGAGAACAAGCTCTGAACGTGAAATGGTGTGGGATCAGATGAAGTCCAGTTCGTTTAAATTGAATGAGAAAATGATTGAAACGTTGTTTGTAGTGAACACACCAAACCCTAAGGCCAAGGATGCAACTACAAACTCTATTTCTCACCCGCCAAATCAGGAGGAAAGAGTACTCGATCCTAAAAAGTCTCAAAATATTTGTATCTTGCTGAAAGCGCTTAACGTCACTATAGAAGAAGTGTGTGAAGCACTTTTACAAGGTACTACTGATACACTTGGAACAGAATTACTCGAAAGCTTGTTAAGAATGGCACCAAGCAAGGAAGAAGAACGTAAGTTGAGGGAACATAAAGATGACTCACCAACCAAGCTTGGTCTGGCTGAGAAATTTTTGAAGGCAGTGCTTGATGTACCTTTCGCATTTAAAAGGATTGAGGCAATGCTTTTCATAGCCAGTTTTGAGTCTGAAGTGGATTATCTTAGGACATCCTTTCAAACACTAGAGGCTGCCTGTGAAGAGCTGCGACATTCTAGAATGTTCTTGAAGCTGTTGGAGGCTGTACTTAAAACTGGGAACCGCATGAACGTGGGGACCAACCGTGGGGATGCAGAGGCATTCAAACTCGATACTCTTCTCAAGCTGGCTGATGTCAAAGGCGCAGATGGAAAAACCACTCTACTGCATTTTGTTGTACAAGAAATAATTCGAACCGAAGGTGCACGTCTCTTTGACACTAATCAAACTCCAAGCTCTACTACTTTGAACGAAGATGTCAAGTGTAGGAGGCTTGGTCTACAAGTTGTATCAAGCCTGAGTTCAGAGCTATCAAATGTGAAGAAGGCTGCTACTATGGATTCCGAAGTTCTCAGCAGTGATGTGTTAAAGCTTTCCAAAGGAATTGCAAACATAGCAGAGGTTGTGCAGTTAAACCAAACCATGGGGTCAGATGAAAGCAGTCAGAATTTTACTGAATCAGTGAAGAAATTCATCAGAATGGCTGAGGAAGAAATTCCAAAAATTCAAGCCCAAGAAAGTGTTGCTTCCTCCCTTGTGAAGGAGATTACAGAGTATTTTCATGGGAACTTGTCAAAAGAAGAAGCTCATCCATTCAGGCTCTTCATGGTTGTAAGAGACTTTCTAGCAGTTCTTGACCGTGTCTGCAAAGAAGTTGGAATGATAAATGAGAGAACCATGGTTAGTTCAGCTCATAAATTCCCTGTGCCAGTTAATCCAATGCTTCCACAACCCCTTCCTGGATTACATGAGAGCCACCAATATAATAATAATAATAATAACAATACCTCTTCAGATGATGAAGCTCCATCACCTTAG 3099 0.4831 MQASSSFFLLLLFLSCALSSSQLLLFNRRVLHEPFIPLTSLPPSEPPKPPPPHPSPSTSKPKPKYPSSSIIPTTTISSTPVPTTTTTTTPTPLTTQSPFFPLYPSSPPPPSPITFASFPANISSLILPHSPKPNSSPNKLLPVALAAVVAAALTVSISAFVCYRRRRNPPPSPAGKVLRSNTDLLPLRRNAETSVETRKLRHTSSTSSEFLYLGTVANSHMMEDADVGDGDRKMESPELRPLPPLARQASVPPPPPPRDEAGFTTAEEDEDEFYSPRGSSLGGSGGTGSVSRRVFAVDRSVTSSSCSSSSSGSPQRSVLNMPPPASSGYRNTLPKSPENYNHQHVHSSSSMCSTPDRVFAERDNEVLSACVHAHAAPSSSHEGTLEKNENTLPSSPPPRLSDASSSSAFSLPSSPEKVTRHHTFDQSPRMSSVSDGLMLPGLSSVPLSPALLSSPETERGAFSELRTDSFDAQRKHWSIPALSMPITTPFDEIGTVPGPPPLPQRKHWEIPGHAPPPPPPLPRQRKQWGVPAPGPSTPVGQPVSRPPELVPPSRPFVLQNQATNVELPVSLREIEETGKPKLKALHWDKVRTSSEREMVWDQMKSSSFKLNEKMIETLFVVNTPNPKAKDATTNSISHPPNQEERVLDPKKSQNICILLKALNVTIEEVCEALLQGTTDTLGTELLESLLRMAPSKEEERKLREHKDDSPTKLGLAEKFLKAVLDVPFAFKRIEAMLFIASFESEVDYLRTSFQTLEAACEELRHSRMFLKLLEAVLKTGNRMNVGTNRGDAEAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARLFDTNQTPSSTTLNEDVKCRRLGLQVVSSLSSELSNVKKAATMDSEVLSSDVLKLSKGIANIAEVVQLNQTMGSDESSQNFTESVKKFIRMAEEEIPKIQAQESVASSLVKEITEYFHGNLSKEEAHPFRLFMVVRDFLAVLDRVCKEVGMINERTMVSSAHKFPVPVNPMLPQPLPGLHESHQYNNNNNNNTSSDDEAPSP 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00486 1032 MobiDBLite consensus disorder prediction 296 355 - -
Vian2g00486 1032 MobiDBLite consensus disorder prediction 493 547 - -
Vian2g00486 1032 MobiDBLite consensus disorder prediction 41 94 - -
Vian2g00486 1032 MobiDBLite consensus disorder prediction 246 260 - -
Vian2g00486 1032 PANTHER FORMIN-RELATED 7 1014 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vian2g00486 1032 MobiDBLite consensus disorder prediction 494 526 - -
Vian2g00486 1032 SUPERFAMILY Formin homology 2 domain (FH2 domain) 585 984 - -
Vian2g00486 1032 ProSiteProfiles Formin homology-2 (FH2) domain profile. 572 998 IPR015425 -
Vian2g00486 1032 MobiDBLite consensus disorder prediction 1010 1032 - -
Vian2g00486 1032 MobiDBLite consensus disorder prediction 381 417 - -
Vian2g00486 1032 Gene3D Formin, FH2 domain 579 993 IPR042201 -
Vian2g00486 1032 MobiDBLite consensus disorder prediction 371 460 - -
Vian2g00486 1032 MobiDBLite consensus disorder prediction 223 357 - -
Vian2g00486 1032 MobiDBLite consensus disorder prediction 224 238 - -
Vian2g00486 1032 MobiDBLite consensus disorder prediction 1002 1032 - -
Vian2g00486 1032 MobiDBLite consensus disorder prediction 41 61 - -
Vian2g00486 1032 MobiDBLite consensus disorder prediction 62 94 - -
Vian2g00486 1032 SMART it6_source 572 987 IPR015425 -
Vian2g00486 1032 Pfam Formin Homology 2 Domain 576 972 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00486 Vian-Chr2 5846257 5850158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00486 511 990 FH2 protein (formin) Gene Family AT2G43800 55.804 2.52e-162 499