Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00474 ATGCCTCCGAGGGTAGTGAAGAGAGGCGCTGCAGCGAAGAGGGCGTCGAGAGGATCCTCGAAGGCTGCACCTGATAACCAGCGTGAGCCAGAAACTGCTGAAGTGGAGGCCAAAAATCATGCAGAAAATTCAGCTGTTGATGTTGGAATGGAAGAAAAACACTTTGTCGTGGACCAAGAGCTTCCGGAAGCCCCAAATGGGTCGGCTAAGGTGGAAAACAATGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGGTGAACATTTAGATTTAGAGGATAATTATCCTGAGTATGAAGCAGAGGATTATGGTGGTGTTGACTATGATGAAAAGGAAATTGAACAAGATGAAGGTCAGGATGAGGCAGATGAAGTAGAGGAAGAACCTGAAGAGATTATAGGTGACGAAGAGGGTGATACAGGTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGATGACGATGATGGTGAACATGCTGGTGAGGAGCATGAGCATGATGAGCATGCCCAGGTGCCTGACGTGGAGGAAGAGGAACACCGCGAAGTTGTAAAGGAGAGGCGAAAGCGTAAGGAATTTGAAGTATTTGTGGGGGGACTAGATAAGAATGCTACCGAGCATGATCTGAAGAAGGTTTTCAGCAAAGTTGGGGTAGTTACTGAAGTCAGGCTGATGATAAATCCCCAGACTAGAAGAAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTTGAGCAAGCAAAAAGAGCTGTGGTGGAGCTAAAAAATCCAGTGATTAATGGTAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTACTTAGGTAACATATGCAAGACTTGGAAAAAGGAAGCTTTGAAGGAGAAACTAAAACATTATGGAGTAGAAAATGTGGAGGATTTGACTTTAGTAGAAGATGATACCAATGAGGGGATGAACCGAGGATTTGCATTTTTAGAGTTTTCATCTCGTTCAGATGCTAAGGAAGCCTACAGGAGATTGCAAAAGAGAGATGTTGTGTTTGGAGTTGATAAGCCTGCGAAGGTTTCCTTTGCTGATTCCTTTATTGATCTGGGTGATGAAATTATGGCACAGGTTAAAACTGTATTTATTGATTCACTACCTCCGTCATGGGATGAAGATTATGTCCGGGATCTTCTCAAGAAATATGGAGAGATTGAAAAAATTGAGCTTGCTAGGAACATGCCAGCTGCACGCAGGAAGAACTATGGATTTGTTACATTTAGTACACATGCTGCTGCTGTGGAATGTGCTGATAGCATAACTAGTGCAGGGTTAGGTGAAGGTGACAGAAAGGCAAAAGTTAGGGCAAGATTATCACGGCCTCTTTCCAAACCTCTTCAGAGAGGCCGTGGGAAACACAATAACCATGGGACAGACTTTCGTTCTGGTCGCAACTCTGGAAGATTGGCAAGACCTTCACGGGGTCGACCTGCTCCATCTAGTTATCCTACCCGTGTGGTTAGAGGCATTGGAAGTCGTGCTCCACCAGTTAGACCTGTTAGTGTTAGAAGTAGACGTCCTGTCACATCCATGCTAGAAAGAGACAGGCCAGTTGCTCCTCCAGCTAGAACCTTTGAAAGGAGATTGACTGCTCCTGCATATTCAAAAAGTGGCATGAAAAGAGACTATAGTCGACGTGAGGATCTACCGCCTCCAAGAAGCAGAGTTGCTGCAGATTATGGCTCTAGGATAGCATCTCAGAGGCACACATCTTATAGGGATTATCCTGCCCGTGGTTCTGACTACCCTGAGCTACATAGAAGTAGTTCTCGTGCTGCACCAAAGAGGGGTTATGTTGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCTCCTCCCCATCTAAGTTATCGAGAAGGACGACCCCGTGACTATGAAACTATAGCTGGCTCAAAACGTCCTTATACTGCTATAGATGATGTTCCTCCACGGTATGATACTGGTGCTCGCCAATCAAGATCCCGTTTAGATTATGAATACGGAAGTAGTGCTTCACAGTATGGAGATGCTTATCGTGATAGACTTGGAAGATCTAGTCTGGGATATAGTGGCAGCAGAACTTCCATTTCTAGTCAAGAATTACATGGGACGTATGGCAGTCGACAGGGCATAAGTTATGGTGGAGGTTCTTTTGGTGGTAGTGATGGTGGTATGTACACATCAAGTTATGGTGGTGAATACGAATCTCGTGGAAGTGATGTTGGGGGCCGCTCATATTCGTCCATGTACTCTGGTAGAGGTGTGGGTGGTGGTAGCAGCAGCTATATGGGTGGTGGTGGCGGCTCTGGGTCTTATTATTGA 2343 0.4499 MPPRVVKRGAAAKRASRGSSKAAPDNQREPETAEVEAKNHAENSAVDVGMEEKHFVVDQELPEAPNGSAKVENNEEEVKESIDEYEKGEHLDLEDNYPEYEAEDYGGVDYDEKEIEQDEGQDEADEVEEEPEEIIGDEEGDTGDEEVEYVYEEVEDDDDGEHAGEEHEHDEHAQVPDVEEEEHREVVKERRKRKEFEVFVGGLDKNATEHDLKKVFSKVGVVTEVRLMINPQTRRNKGFAFLRFETVEQAKRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLVEDDTNEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVVFGVDKPAKVSFADSFIDLGDEIMAQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKNYGFVTFSTHAAAVECADSITSAGLGEGDRKAKVRARLSRPLSKPLQRGRGKHNNHGTDFRSGRNSGRLARPSRGRPAPSSYPTRVVRGIGSRAPPVRPVSVRSRRPVTSMLERDRPVAPPARTFERRLTAPAYSKSGMKRDYSRREDLPPPRSRVAADYGSRIASQRHTSYRDYPARGSDYPELHRSSSRAAPKRGYVDDGYGQRFERPPPPHLSYREGRPRDYETIAGSKRPYTAIDDVPPRYDTGARQSRSRLDYEYGSSASQYGDAYRDRLGRSSLGYSGSRTSISSQELHGTYGSRQGISYGGGSFGGSDGGMYTSSYGGEYESRGSDVGGRSYSSMYSGRGVGGGSSSYMGGGGGSGSYY 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00474 780 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 21 780 - -
Vian2g00474 780 CDD RRM_SF 198 269 - -
Vian2g00474 780 MobiDBLite consensus disorder prediction 757 780 - -
Vian2g00474 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 375 432 IPR000504 GO:0003723
Vian2g00474 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 266 IPR000504 GO:0003723
Vian2g00474 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 344 IPR000504 GO:0003723
Vian2g00474 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 373 453 IPR000504 GO:0003723
Vian2g00474 780 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 126 276 - -
Vian2g00474 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Vian2g00474 780 CDD RRM_SF 375 430 - -
Vian2g00474 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 360 IPR000504 GO:0003723
Vian2g00474 780 FunFam Heterogeneous nuclear ribonucleoprotein Q 277 359 - -
Vian2g00474 780 MobiDBLite consensus disorder prediction 553 567 - -
Vian2g00474 780 MobiDBLite consensus disorder prediction 649 668 - -
Vian2g00474 780 SUPERFAMILY RNA-binding domain, RBD 368 479 IPR035979 GO:0003676
Vian2g00474 780 MobiDBLite consensus disorder prediction 27 59 - -
Vian2g00474 780 FunFam RNA recognition water-stress protein1 363 489 - -
Vian2g00474 780 MobiDBLite consensus disorder prediction 452 634 - -
Vian2g00474 780 Coils Coil 68 88 - -
Vian2g00474 780 MobiDBLite consensus disorder prediction 593 608 - -
Vian2g00474 780 MobiDBLite consensus disorder prediction 165 184 - -
Vian2g00474 780 SUPERFAMILY RNA-binding domain, RBD 197 341 IPR035979 GO:0003676
Vian2g00474 780 MobiDBLite consensus disorder prediction 111 164 - -
Vian2g00474 780 Gene3D - 277 359 IPR012677 -
Vian2g00474 780 MobiDBLite consensus disorder prediction 111 184 - -
Vian2g00474 780 Coils Coil 110 130 - -
Vian2g00474 780 Gene3D - 155 276 IPR012677 -
Vian2g00474 780 MobiDBLite consensus disorder prediction 70 95 - -
Vian2g00474 780 Gene3D - 365 490 IPR012677 -
Vian2g00474 780 MobiDBLite consensus disorder prediction 1 99 - -
Vian2g00474 780 SMART rrm1_1 374 449 IPR000504 GO:0003723
Vian2g00474 780 SMART rrm1_1 197 270 IPR000504 GO:0003723
Vian2g00474 780 SMART rrm1_1 277 356 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00474 Vian-Chr2 5666735 5671131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00474 191 459 Eukaryotic Initiation Factors Gene Family AT1G49760 24.183 1.02e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00474 - - gmx:100808583 1103.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g01444 9 30355472 30360398 Vian2g00474 2 5666735 5671131 PCT