Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00463 ATGCTGGTTCTGTTTCTTTGTGTCTTTCTAACACTCTTGGGGCCTCAAGCTGCTGCTGAAGACAGTGAAGCAAATGCTTTGTTGAAGTGGAAACACAGCTTTGACAACCACAGCCAATCTCTGTTATCAACATGGAGAGGCAATAATCCATGCACATGGAAAGGAATTCAGTGTGACAAATCCAAGTCTGTATCCACCATAAATCTCTCTAGTTATGAACTCAAAGGTACACTCCACACTCTTAGCTTCTCCATTTTGCCTAACCTTCTCAGCCTCAATATCTACCATAACTCCTTTCATGGGACCATTCCCCCACAGATTGGTAACTTAACCAAAGTAAATGTTTTAAATTTTTCTTCAAATTCTTTCCACGGTTCCATTCCTCAAGAAATGTGGACACTGGGGAGTTTACATAGTCTTGATCTTTCCTTGTGTCACCTAAGTGGAGAGCTTCCTAATTCCATGGGAAACTTGTCCAATCTGTCATTTCTAGATTTAGGTGGCAACAATTTTTCTAGCACCATTCCTCCTGGGATTGGAAAGTTGCACAAGTTGCAGTATCTGGGTATGGGAGATTGTAACCTTTTTGGTTCCATTCCTCAAGAAATTGGAATGTTGACAAACCTTGAACTTATTGATTTGTCAAGAAACTCTCTTTCTGGTACCATCCCTGAAACAATAGTGCCAAGAAGCTTAAAGAATTGCTCTAGTATTGCTAGACTCAGGATGGAAGGAAACCAATTGGAAGGAGATATAGCACAAGATTTTGGTGTATATCCAAATTTGGCGTATATTGATTTGAGTGACAATAAATTTCATGGTCACATTTCACCAAACTGGGGAAAGTGCCACAATCTTTATACCTTAAAGATATCCAACAATAATATTTCCGGGGTTATACCAATAAAACTTGCTGGGGCAAACAAGCTAGGTGTGCTTCACCTTTCTTCTAATCACTTGAGTGGAAAGCTTCCAAAGGAATTAGGGAATTTGAAATCGTTATTTCAACTCAAGATTAGTAATAACCATCTTTCTGGAAACATTCCAACAGAAATTGGATTACTGCAAAATCTTGAAGATTTGGATCTGGGAGATAACGAGTTGAGTGGCCCAATACCAATAGAAGTTGTGAAACTGCACAAGTTACGGAATTTGAATTTGAGCAAAAACAATATTGGTGGAAGCATTCCCTCTCAGTTTAGCCAATATTTAGTATCTCTTGATCTTAGTTCCAATTTGTTGATTGGAACAATACCAACAAATATTGGAGAGTTGCAAAGGTTGTTCATGTTGAATCTCTCACACAATAGTCTTTCTGGCACCATTCCTTCCACTTTTGGCAGAGCATTGAGTATCGTCAACATATCGGACAATCAATTAGAAGGGCCAATTCCAAATATTCCACCTTTTCTTGATGCTCCAATTGAATCATTGAAAAACAATAAAGGCTTATGTGGTGATGTCAGGGTATTGGATCTTTGTCCAACCAATCATAGTCGAAAGAGCAACAAAGTGATCCTAGTGACATTCCTTAGTTTAGGAGCCCTAGTATTTGTTCTATGTGGGGTGGCACTTTCAATGTACATTTTTTGTCGTGGTAAAAGAAAGGGAAAAAGTCATTCTAATTCTCAAGAAGCGCCAAGGAAGGCAGTCTTTTCCGTATGGAGCTACGATGGAAAAATCATGTTTGAAAATATCATTGAAGCTACAGAGAATTTTGATGACAAATATCTCATTGGAGCAGGAAGTCAAGGATATGTTTACAAGGTGGTGTTACCTTCGGGTTTGGTTGTTGCTGTGAAGAAACTTCATTCAGCGATAGATGAGGAAATGTCAGAATTCAGTTCAAAGGCTTTTGCAAGTGAGATTAAAGCATTGACAGAAATCAAACATCGGAACATTATAAAGTTGCATGGATTTTGCTCACATTCACAGGTCTCATTCTTGGTCTATCAGTTCATGGAAGGGGGTAGCTTGGATCAGTTGCTGAACAAAGATACAGAAGCAACTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGCTTGGCCAATGCTTTATCTTATTTGCATCACGATTGCTCACCTCCAATTGTTCATCGGGACATATCAAGTAAAAATGTTCTTTTGGATCTTGAGTACGAAGCTCATGTTTCTGACTTCGGGACTGCTAAGTTTTTGAAGCCTAGTTCAAGAAGTTGGACTGAATTCGCAGGCACCTTTGGGTATGCTGCTCCAGATCAACGGCCTCCTCAACCTACAAAACCAATTGATGGGGAGGTGATCTTAATCGTAAGGTTAGCACTTGCTTGCTTGAGTCAAAATCCACGTTCTCGCCCAACCATGGAACAAGTATCCAAGGCATTTGGAACAGGAAAATCACCTTCGGCTGACCTATTTCCTAGGATCAGTTTGGGACAACTCTGCTGA 2433 0.3966 MLVLFLCVFLTLLGPQAAAEDSEANALLKWKHSFDNHSQSLLSTWRGNNPCTWKGIQCDKSKSVSTINLSSYELKGTLHTLSFSILPNLLSLNIYHNSFHGTIPPQIGNLTKVNVLNFSSNSFHGSIPQEMWTLGSLHSLDLSLCHLSGELPNSMGNLSNLSFLDLGGNNFSSTIPPGIGKLHKLQYLGMGDCNLFGSIPQEIGMLTNLELIDLSRNSLSGTIPETIVPRSLKNCSSIARLRMEGNQLEGDIAQDFGVYPNLAYIDLSDNKFHGHISPNWGKCHNLYTLKISNNNISGVIPIKLAGANKLGVLHLSSNHLSGKLPKELGNLKSLFQLKISNNHLSGNIPTEIGLLQNLEDLDLGDNELSGPIPIEVVKLHKLRNLNLSKNNIGGSIPSQFSQYLVSLDLSSNLLIGTIPTNIGELQRLFMLNLSHNSLSGTIPSTFGRALSIVNISDNQLEGPIPNIPPFLDAPIESLKNNKGLCGDVRVLDLCPTNHSRKSNKVILVTFLSLGALVFVLCGVALSMYIFCRGKRKGKSHSNSQEAPRKAVFSVWSYDGKIMFENIIEATENFDDKYLIGAGSQGYVYKVVLPSGLVVAVKKLHSAIDEEMSEFSSKAFASEIKALTEIKHRNIIKLHGFCSHSQVSFLVYQFMEGGSLDQLLNKDTEATAFDWEKRVNVVKGLANALSYLHHDCSPPIVHRDISSKNVLLDLEYEAHVSDFGTAKFLKPSSRSWTEFAGTFGYAAPDQRPPQPTKPIDGEVILIVRLALACLSQNPRSRPTMEQVSKAFGTGKSPSADLFPRISLGQLC 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00463 810 Pfam Leucine rich repeat N-terminal domain 21 59 IPR013210 -
Vian2g00463 810 ProSiteProfiles Protein kinase domain profile. 573 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00463 810 Pfam Leucine Rich Repeat 208 235 IPR001611 GO:0005515
Vian2g00463 810 Pfam Leucine rich repeat 285 344 IPR001611 GO:0005515
Vian2g00463 810 Gene3D Ribonuclease Inhibitor 173 229 IPR032675 -
Vian2g00463 810 SUPERFAMILY L domain-like 48 302 - -
Vian2g00463 810 ProSitePatterns Tyrosine protein kinases specific active-site signature. 699 711 IPR008266 GO:0004672|GO:0006468
Vian2g00463 810 SUPERFAMILY L domain-like 227 486 - -
Vian2g00463 810 FunFam Os07g0541700 protein 654 739 - -
Vian2g00463 810 Gene3D Ribonuclease Inhibitor 230 496 IPR032675 -
Vian2g00463 810 Gene3D Ribonuclease Inhibitor 21 172 IPR032675 -
Vian2g00463 810 FunFam MDIS1-interacting receptor like kinase 2 isoform A 20 175 - -
Vian2g00463 810 Gene3D Transferase(Phosphotransferase) domain 1 654 759 - -
Vian2g00463 810 FunFam Leucine-rich repeat receptor protein kinase MSP1 535 653 - -
Vian2g00463 810 Pfam Protein kinase domain 575 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00463 810 FunFam Leucine-rich repeat receptor-like protein kinase TDR 226 496 - -
Vian2g00463 810 Gene3D Phosphorylase Kinase; domain 1 534 653 - -
Vian2g00463 810 SUPERFAMILY Protein kinase-like (PK-like) 558 788 IPR011009 -
Vian2g00463 810 SMART LRR_typ_2 331 355 IPR003591 -
Vian2g00463 810 SMART LRR_typ_2 158 182 IPR003591 -
Vian2g00463 810 SMART LRR_typ_2 379 402 IPR003591 -
Vian2g00463 810 SMART LRR_typ_2 425 449 IPR003591 -
Vian2g00463 810 SMART LRR_typ_2 86 110 IPR003591 -
Vian2g00463 810 SMART LRR_typ_2 206 230 IPR003591 -
Vian2g00463 810 PANTHER LEUCINE RICH REPEAT KINASE 2 43 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00463 Vian-Chr2 5542663 5546065 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00463 82 776 Receptor kinase-like Gene Family AT4G08850 41.746 7.54e-180 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian2g00463 Pkinase 6.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00463 - - gmx:100815688 798.119